Contig : dd_Smed_v6_126_0_1 S. mediterranea

Id  dd_Smed_v6_126_0_1 Length  588    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_001988.1 Homo sapiens Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed 6.0E-32 102-494 393 1
NP_032016.1 Mus musculus Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived) 4.0E-31 102-494 393 1
XP_008215923.1 Nasonia vitripennis ubiquitin-like protein FUBI 2.0E-36 102-491 390 1

5 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
G3DSA:3.10.20.90 GENE3D Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 8.6E-6 108-287 180 1
PTHR12650 PANTHER 40S RIBOSOMAL PROTEIN S30/UBIQUITIN-LIKE PROTEIN F 1.9E-62 81-494 414 1
PF04758 PFAM IPR006846 Ribosomal protein S30 8.0E-31 318-488 171 1
SSF54236 SSF IPR029071 Ubiquitin-like 4.14E-9 105-380 276 1
PS50053 PROFILE IPR000626 Ubiquitin domain profile. 11.703 102-308 207 1

2 ORFs

Contig Location Length Strand Sequence
3-497 495 1
71-289 219 -1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF313779 1.4E-63 3 214.7 0.664966 102-492 391 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)