Transcript : dd_Smed_v6_126_0_1 S. mediterranea

Length  588     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_001988.1 Homo sapiens Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed 6.0E-32 102-494 393 1
NP_032016.1 Mus musculus Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived) 4.0E-31 102-494 393 1
XP_008215923.1 Nasonia vitripennis ubiquitin-like protein FUBI 2.0E-36 102-491 390 1

5 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
G3DSA:3.10.20.90 GENE3D Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 8.6E-6 108-287 180 1
PTHR12650 PANTHER 40S RIBOSOMAL PROTEIN S30/UBIQUITIN-LIKE PROTEIN F 1.9E-62 81-494 414 1
PF04758 PFAM IPR006846 Ribosomal protein S30 8.0E-31 318-488 171 1
SSF54236 SSF IPR029071 Ubiquitin-like 4.14E-9 105-380 276 1
PS50053 PROFILE IPR000626 Ubiquitin domain profile. 11.703 102-308 207 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

2 ORFs

Contig Location Length Strand Sequence
3-497 495 1
71-289 219 -1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF313779 1.4E-63 3 214.7 0.664966 102-492 391 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)