Contig : dd_Smed_v6_124_0_1 S. mediterranea
Id  dd_Smed_v6_124_0_1 Length  1772    Open in Genome Browser
Paste the following link

J Browse Displayer

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_033472.1 Mus musculus tubulin, alpha 3A 0.0 190-1485 1296 1
NP_476772.1 Drosophila melanogaster alpha-Tubulin at 84B 0.0 190-1485 1296 1
NP_956985.1 Danio rerio tubulin, alpha 8 like 2 0.0 190-1485 1296 1

34 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
SSF55307 SSF IPR008280 Tubulin C-terminal domain-like 2.59E-87 925-1500 576 1
SSF52490 SSF IPR003008 Tubulin nucleotide-binding domain-like 9.29E-97 190-918 729 1
SM00865 SMART IPR018316 Tubulin/FtsZ family, C-terminal domain 3.1E-57 931-1365 435 1
G3DSA:3.40.50.1440 GENE3D IPR003008   4.5E-129 190-990 801 1
SM00864 SMART IPR003008 Tubulin/FtsZ family, GTPase domain 3.1E-77 334-924 591 1
PTHR11588:SF65 PANTHER TUBULIN ALPHA-3C/D CHAIN 0.0 190-1536 1347 1
PF03953 PFAM IPR018316 Tubulin C-terminal domain 9.4E-52 976-1365 390 1
G3DSA:3.30.1330.20 GENE3D IPR018316   3.2E-56 997-1335 339 1
G3DSA:1.10.287.600 GENE3D IPR023123 Helix hairpin bin 1.3E-29 1339-1503 165 1
PTHR11588 PANTHER IPR000217 TUBULIN 0.0 190-1536 1347 1
PS00227 PROSITE IPR017975 Tubulin subunits alpha, beta, and gamma signature. 0.0 613-630 18 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 3.6E-109 322-360 39 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 3.6E-109 547-570 24 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 3.6E-109 241-285 45 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 3.6E-109 1267-1323 57 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 3.6E-109 1453-1500 48 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 3.6E-109 670-702 33 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 3.6E-109 451-489 39 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 3.6E-109 631-666 36 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 3.6E-109 829-864 36 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 3.6E-109 1342-1389 48 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 3.6E-109 1228-1266 39 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 3.6E-109 1150-1212 63 1
PF00091 PFAM IPR003008 Tubulin/FtsZ family, GTPase domain 3.7E-70 196-861 666 1
PR01161 PRINTS IPR000217 Tubulin signature 1.5E-89 763-822 60 1
PR01161 PRINTS IPR000217 Tubulin signature 1.5E-89 721-759 39 1
PR01161 PRINTS IPR000217 Tubulin signature 1.5E-89 646-708 63 1
PR01161 PRINTS IPR000217 Tubulin signature 1.5E-89 217-276 60 1
PR01161 PRINTS IPR000217 Tubulin signature 1.5E-89 346-402 57 1
PR01161 PRINTS IPR000217 Tubulin signature 1.5E-89 1327-1410 84 1

12 ORFs

Contig Location Length Strand Sequence
190-1545 1356 1
901-1188 288 -1
52-273 222 -1
1256-1471 216 -1
295-510 216 -1
1005-1211 207 -1
1154-1321 168 1
1-129 129 1
1647-1772 126 -1
491-610 120 -1
1484-1597 114 1
428-529 102 1

2 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF330882 4.1E-76 1 255.8 0.7370203 192-1497 1306 1
TF300477 1.6E-80 1 270.1 0.7336343 195-1494 1300 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)