Contig : dd_Smed_v6_124_0_1 S. mediterranea

Id  dd_Smed_v6_124_0_1 Length  1772    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_033472.1 Mus musculus tubulin, alpha 3A 0.0 190-1485 1296 1
NP_476772.1 Drosophila melanogaster alpha-Tubulin at 84B 0.0 190-1485 1296 1
NP_956985.1 Danio rerio tubulin, alpha 8 like 2 0.0 190-1485 1296 1

34 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
SSF55307 SSF IPR008280 Tubulin C-terminal domain-like 2.59E-87 925-1500 576 1
SSF52490 SSF IPR003008 Tubulin nucleotide-binding domain-like 9.29E-97 190-918 729 1
SM00865 SMART IPR018316 Tubulin/FtsZ family, C-terminal domain 3.1E-57 931-1365 435 1
G3DSA:3.40.50.1440 GENE3D IPR003008   4.5E-129 190-990 801 1
SM00864 SMART IPR003008 Tubulin/FtsZ family, GTPase domain 3.1E-77 334-924 591 1
PTHR11588:SF65 PANTHER TUBULIN ALPHA-3C/D CHAIN 0.0 190-1536 1347 1
PF03953 PFAM IPR018316 Tubulin C-terminal domain 9.4E-52 976-1365 390 1
G3DSA:3.30.1330.20 GENE3D IPR018316   3.2E-56 997-1335 339 1
G3DSA:1.10.287.600 GENE3D IPR023123 Helix hairpin bin 1.3E-29 1339-1503 165 1
PTHR11588 PANTHER IPR000217 TUBULIN 0.0 190-1536 1347 1
PS00227 PROSITE IPR017975 Tubulin subunits alpha, beta, and gamma signature. 0.0 613-630 18 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 3.6E-109 322-360 39 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 3.6E-109 547-570 24 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 3.6E-109 241-285 45 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 3.6E-109 1267-1323 57 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 3.6E-109 1453-1500 48 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 3.6E-109 670-702 33 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 3.6E-109 451-489 39 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 3.6E-109 631-666 36 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 3.6E-109 829-864 36 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 3.6E-109 1342-1389 48 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 3.6E-109 1228-1266 39 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 3.6E-109 1150-1212 63 1
PF00091 PFAM IPR003008 Tubulin/FtsZ family, GTPase domain 3.7E-70 196-861 666 1
PR01161 PRINTS IPR000217 Tubulin signature 1.5E-89 763-822 60 1
PR01161 PRINTS IPR000217 Tubulin signature 1.5E-89 721-759 39 1
PR01161 PRINTS IPR000217 Tubulin signature 1.5E-89 646-708 63 1
PR01161 PRINTS IPR000217 Tubulin signature 1.5E-89 217-276 60 1
PR01161 PRINTS IPR000217 Tubulin signature 1.5E-89 346-402 57 1
PR01161 PRINTS IPR000217 Tubulin signature 1.5E-89 1327-1410 84 1

12 ORFs

Contig Location Length Strand Sequence
190-1545 1356 1
901-1188 288 -1
52-273 222 -1
1256-1471 216 -1
295-510 216 -1
1005-1211 207 -1
1154-1321 168 1
1-129 129 1
1647-1772 126 -1
491-610 120 -1
1484-1597 114 1
428-529 102 1

2 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF330882 4.1E-76 1 255.8 0.7370203 192-1497 1306 1
TF300477 1.6E-80 1 270.1 0.7336343 195-1494 1300 1
 

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To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)