Transcript : dd_Smed_v6_1247_0_1 S. mediterranea

Length  2636     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
EST: AY068462.1, clone H.48.5h unknown mRNA sequence
AY067470.1, clone HB.2.7c unknown mRNA sequence
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Sequence Features

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3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_000273.2 Homo sapiens propionyl-CoA carboxylase alpha subunit 0.0 226-2268 2043 1
NP_659093.2 Mus musculus propionyl-Coenzyme A carboxylase, alpha polypeptide 0.0 223-2268 2046 1
NP_001002746.1 Danio rerio propionyl CoA carboxylase, alpha polypeptide 0.0 229-2268 2040 1

21 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
G3DSA:3.40.50.20 GENE3D IPR016185   8.6E-47 247-624 378 1
PS00867 PROSITE IPR005479 Carbamoyl-phosphate synthase subdomain signature 2. 0.0 1099-1119 21 1
PS00188 PROSITE IPR001882 Biotin-requiring enzymes attachment site. 0.0 2134-2184 51 1
PTHR18866:SF33 PANTHER PROPIONYL-COA CARBOXYLASE ALPHA CHAIN, MITOCHONDRI 0.0 103-2265 2163 1
SSF56059 SSF Glutathione synthetase ATP-binding domain-like 6.9E-65 490-1293 804 1
SM00878 SMART IPR005482 Biotin carboxylase C-terminal domain 1.3E-48 1249-1572 324 1
PF02785 PFAM IPR005482 Biotin carboxylase C-terminal domain 4.9E-34 1249-1569 321 1
G3DSA:2.40.50.100 GENE3D   1.2E-24 2053-2265 213 1
SSF51246 SSF IPR011054 Rudiment single hybrid motif 5.23E-37 1234-1581 348 1
PF00364 PFAM IPR000089 Biotin-requiring enzyme 6.8E-17 2068-2262 195 1
PTHR18866 PANTHER CARBOXYLASE:PYRUVATE/ACETYL-COA/PROPIONYL-COA CARB 0.0 103-2265 2163 1
PS50975 PROFILE IPR011761 ATP-grasp fold profile. 43.888 601-1191 591 1
PF02786 PFAM IPR005479 Carbamoyl-phosphate synthase L chain, ATP binding domain 2.2E-80 586-1203 618 1
PS50968 PROFILE IPR000089 Biotinyl/lipoyl domain profile. 13.767 2062-2262 201 1
PS00866 PROSITE IPR005479 Carbamoyl-phosphate synthase subdomain signature 1. 0.0 700-741 42 1
G3DSA:3.30.1490.20 GENE3D IPR013815 ATP-grasp fold, A domain 3.5E-31 628-846 219 1
G3DSA:3.30.470.20 GENE3D IPR013816 ATP-grasp fold, B domain 4.8E-93 850-1581 732 1
PS50979 PROFILE IPR011764 Biotin carboxylation domain profile. 52.88 244-1584 1341 1
SSF51230 SSF IPR011053 Single hybrid motif 5.23E-20 2029-2265 237 1
SSF52440 SSF IPR016185 PreATP-grasp domain 7.91E-47 172-579 408 1
PF00289 PFAM IPR005481 Carbamoyl-phosphate synthase L chain, N-terminal domain 5.3E-40 244-570 327 1

Genomics

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10 ORFs

Contig Location Length Strand Sequence
130-2268 2139 1
1569-1751 183 -1
693-869 177 -1
539-706 168 1
976-1134 159 -1
76-228 153 -1
2348-2491 144 -1
2474-2587 114 1
2243-2353 111 1
529-630 102 -1

3 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF354220 0.0 1 1361.3 0.7663126 249-2268 2020 1
TF300535 9.1E-145 1 482.9 0.5295903 261-1656 1396 1
TF105650 2.5E-168 1 560.2 0.74241275 321-2277 1957 1

Expression Information

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To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)