Contig : dd_Smed_v6_1240_0_1 S. mediterranea

Id  dd_Smed_v6_1240_0_1 Length  1050    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_003388251.1 Amphimedon queenslandica probable pyridoxine biosynthesis SNZERR-like 1.0E-130 26-913 888 1
XP_002121070.1 Ciona intestinalis probable pyridoxine biosynthesis SNZERR-like 2.0E-127 44-910 867 1
XP_007347746.1 Auricularia delicata TFB-10046 SS5 vitamin B6 biosynthesis protein 5.0E-121 32-886 855 1

9 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
SSF51366 SSF IPR011060 Ribulose-phoshate binding barrel 6.12E-64 83-832 750 1
TIGR00343 TIGRFAMs IPR001852 TIGR00343: pyridoxal 5'-phosphate synthase, synthase subunit Pdx1 1.9E-140 56-892 837 1
PS01235 PROSITE IPR001852 PdxS/SNZ family signature. 0.0 644-697 54 1
PS51129 PROFILE IPR001852 PdxS/SNZ family profile. 135.376 56-916 861 1
PTHR31829 PANTHER FAMILY NOT NAMED 1.2E-192 23-910 888 1
G3DSA:3.20.20.70 GENE3D IPR013785 Aldolase class I 1.4E-47 605-865 261 1
PF01680 PFAM IPR001852 SOR/SNZ family 7.2E-107 44-664 621 1
G3DSA:3.20.20.70 GENE3D IPR013785 Aldolase class I 1.4E-47 101-508 408 1
PTHR31829:SF0 PANTHER PYRIDOXINE BIOSYNTHESIS PROTEIN SNZ1-RELATED 1.2E-192 23-910 888 1

5 ORFs

Contig Location Length Strand Sequence
26-919 894 1
131-289 159 -1
647-802 156 -1
640-783 144 -1
267-368 102 -1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF342700 6.8E-199 2 661.4 0.8238095 45-909 865 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)