Transcript : dd_Smed_v6_1231_0_1 S. mediterranea

Length  1143     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_002801.1 Homo sapiens proteasome 26S subunit, non-ATPase 4 4.0E-74 54-1031 978 1
XP_008321333.1 Cynoglossus semilaevis 26S proteasome non-ATPase regulatory subunit 4-like 1.0E-79 54-1031 978 1
XP_007556198.1 Poecilia formosa 26S proteasome non-ATPase regulatory subunit 4-like 2.0E-79 54-1031 978 1

10 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF13519 PFAM von Willebrand factor type A domain 1.3E-10 69-536 468 1
SM00726 SMART IPR003903 Ubiquitin-interacting motif. 210.0 792-848 57 1
SM00726 SMART IPR003903 Ubiquitin-interacting motif. 4.4 873-929 57 1
SM00726 SMART IPR003903 Ubiquitin-interacting motif. 2.5 669-725 57 1
PF02809 PFAM IPR003903 Ubiquitin interaction motif 2.7E-4 870-917 48 1
SSF53300 SSF IPR002035 vWA-like 7.95E-25 63-536 474 1
G3DSA:3.40.50.410 GENE3D IPR002035   2.0E-4 69-581 513 1
PTHR10223 PANTHER IPR027040 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 6.3E-118 36-917 882 1
PF02809 PFAM IPR003903 Ubiquitin interaction motif 0.36 789-839 51 1
PF02809 PFAM IPR003903 Ubiquitin interaction motif 0.003 672-716 45 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

4 ORFs

Contig Location Length Strand Sequence
3-1091 1089 1
557-805 249 -1
622-807 186 1
793-894 102 -1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF106232 2.0E-138 3 462.4 0.8591426 54-1035 982 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)