Contig : dd_Smed_v6_1231_0_1 S. mediterranea

Id  dd_Smed_v6_1231_0_1 Length  1143    Open in Genome Browser

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_002801.1 Homo sapiens proteasome (prosome, macropain) 26S subunit, non-ATPase, 4 4.0E-74 54-1031 978 1
XP_008321333.1 Cynoglossus semilaevis 26S proteasome non-ATPase regulatory subunit 4-like 1.0E-79 54-1031 978 1
XP_007556198.1 Poecilia formosa 26S proteasome non-ATPase regulatory subunit 4-like 2.0E-79 54-1031 978 1

10 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF13519 PFAM von Willebrand factor type A domain 1.3E-10 69-536 468 1
SM00726 SMART IPR003903 Ubiquitin-interacting motif. 210.0 792-848 57 1
SM00726 SMART IPR003903 Ubiquitin-interacting motif. 4.4 873-929 57 1
SM00726 SMART IPR003903 Ubiquitin-interacting motif. 2.5 669-725 57 1
PF02809 PFAM IPR003903 Ubiquitin interaction motif 2.7E-4 870-917 48 1
SSF53300 SSF IPR002035 vWA-like 7.95E-25 63-536 474 1
G3DSA:3.40.50.410 GENE3D IPR002035   2.0E-4 69-581 513 1
PTHR10223 PANTHER IPR027040 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 6.3E-118 36-917 882 1
PF02809 PFAM IPR003903 Ubiquitin interaction motif 0.36 789-839 51 1
PF02809 PFAM IPR003903 Ubiquitin interaction motif 0.003 672-716 45 1

4 ORFs

Contig Location Length Strand Sequence
3-1091 1089 1
557-805 249 -1
622-807 186 1
793-894 102 -1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF106232 2.0E-138 3 462.4 0.8591426 54-1035 982 1
 

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0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)