Contig : dd_Smed_v6_121_0_1 S. mediterranea

Id  dd_Smed_v6_121_0_1 Length  850    Open in Genome Browser

J Browse Displayer

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_005575916.1 Macaca fascicularis ribosomal protein S27a 1.0E-57 143-610 468 1
XP_003125184.2 Sus scrofa ribosomal protein S27a 3.0E-57 143-610 468 1
XP_003385055.1 Amphimedon queenslandica ubiquitin-40S ribosomal protein S27a-like 6.0E-57 146-610 465 1

12 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF00240 PFAM IPR000626 Ubiquitin family 7.1E-35 161-364 204 1
PS00299 PROSITE IPR019954 Ubiquitin domain signature. 0.0 224-298 75 1
PR00348 PRINTS IPR019956 Ubiquitin signature 4.76E-39 302-364 63 1
PR00348 PRINTS IPR019956 Ubiquitin signature 4.76E-39 176-235 60 1
PR00348 PRINTS IPR019956 Ubiquitin signature 4.76E-39 239-298 60 1
SM00213 SMART IPR000626 Ubiquitin homologues 1.2E-35 146-358 213 1
SSF54236 SSF IPR029071 Ubiquitin-like 1.42E-35 146-421 276 1
PS50053 PROFILE IPR000626 Ubiquitin domain profile. 30.713 146-370 225 1
SSF57829 SSF IPR011332 Zn-binding ribosomal proteins 2.01E-20 443-598 156 1
PTHR10666 PANTHER UBIQUITIN 2.1E-121 146-586 441 1
G3DSA:3.10.20.90 GENE3D Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 7.5E-51 146-418 273 1
PF01599 PFAM IPR002906 Ribosomal protein S27a 7.3E-28 446-583 138 1

4 ORFs

Contig Location Length Strand Sequence
146-610 465 1
300-494 195 1
296-424 129 -1
476-595 120 -1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300036 2.6E-82 2 274.6 0.45294118 219-603 385 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)