Transcript : dd_Smed_v6_1206_0_1 S. mediterranea

Length  1059     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_062328.3 Mus musculus hematopoietic prostaglandin D synthase 9.0E-22 295-882 588 1
NP_001079730.1 Xenopus laevis hematopoietic prostaglandin D synthase 6.0E-33 295-885 591 1
NP_001005090.1 Xenopus tropicalis hematopoietic prostaglandin D synthase 1.0E-28 298-873 576 1

10 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
SSF47616 SSF IPR010987 GST C-terminal domain-like 7.82E-18 514-870 357 1
SSF52833 SSF IPR012336 Thioredoxin-like 4.77E-16 289-510 222 1
PF00043 PFAM IPR004046 Glutathione S-transferase, C-terminal domain 7.1E-5 637-837 201 1
PTHR11571 PANTHER GLUTATHIONE S-TRANSFERASE 2.0E-53 280-870 591 1
PS50405 PROFILE IPR010987 Soluble glutathione S-transferase C-terminal domain profile. 11.997 526-885 360 1
PTHR11571:SF118 PANTHER HEMATOPOIETIC PROSTAGLANDIN D SYNTHASE 2.0E-53 280-870 591 1
PS50404 PROFILE IPR004045 Soluble glutathione S-transferase N-terminal domain profile. 24.441 286-519 234 1
PF02798 PFAM IPR004045 Glutathione S-transferase, N-terminal domain 5.6E-16 295-498 204 1
G3DSA:3.40.30.10 GENE3D IPR012336 Glutaredoxin 4.3E-29 289-534 246 1
G3DSA:1.20.1050.10 GENE3D IPR010987   2.1E-17 538-873 336 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

5 ORFs

Contig Location Length Strand Sequence
280-888 609 1
349-513 165 -1
2-136 135 1
816-929 114 1
82-195 114 -1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF353041 6.7E-43 1 146.3 0.55335224 297-882 586 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)