Contig : dd_Smed_v6_1206_0_1 S. mediterranea

Id  dd_Smed_v6_1206_0_1 Length  1059    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_062328.3 Mus musculus hematopoietic prostaglandin D synthase 9.0E-22 295-882 588 1
NP_001079730.1 Xenopus laevis hematopoietic prostaglandin D synthase 6.0E-33 295-885 591 1
NP_001005090.1 Xenopus (Silurana) tropicalis hematopoietic prostaglandin D synthase 1.0E-28 298-873 576 1

10 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
SSF47616 SSF IPR010987 GST C-terminal domain-like 7.82E-18 514-870 357 1
SSF52833 SSF IPR012336 Thioredoxin-like 4.77E-16 289-510 222 1
PF00043 PFAM IPR004046 Glutathione S-transferase, C-terminal domain 7.1E-5 637-837 201 1
PTHR11571 PANTHER GLUTATHIONE S-TRANSFERASE 2.0E-53 280-870 591 1
PS50405 PROFILE IPR010987 Soluble glutathione S-transferase C-terminal domain profile. 11.997 526-885 360 1
PTHR11571:SF118 PANTHER HEMATOPOIETIC PROSTAGLANDIN D SYNTHASE 2.0E-53 280-870 591 1
PS50404 PROFILE IPR004045 Soluble glutathione S-transferase N-terminal domain profile. 24.441 286-519 234 1
PF02798 PFAM IPR004045 Glutathione S-transferase, N-terminal domain 5.6E-16 295-498 204 1
G3DSA:3.40.30.10 GENE3D IPR012336 Glutaredoxin 4.3E-29 289-534 246 1
G3DSA:1.20.1050.10 GENE3D IPR010987   2.1E-17 538-873 336 1

5 ORFs

Contig Location Length Strand Sequence
280-888 609 1
349-513 165 -1
2-136 135 1
816-929 114 1
82-195 114 -1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF353041 6.7E-43 1 146.3 0.55335224 297-882 586 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)