Contig : dd_Smed_v6_11_0_1 S. mediterranea

Id  dd_Smed_v6_11_0_1 Length  810    Open in Genome Browser

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Planmine Rnai Result Displayer

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Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_610831.1 Drosophila melanogaster CG13321 gene product from transcript CG13321-RB 4.0E-22 289-702 414 1
XP_005178844.1 Musca domestica C3 and PZP-like alpha-2-macroglobulin domain-containing protein 8-like 1.0E-22 283-705 423 1
XP_002033642.1 Drosophila sechellia GM21436 gene product from transcript GM21436-RA 4.0E-22 289-702 414 1

4 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR31649 PANTHER FAMILY NOT NAMED 3.3E-37 259-705 447 1
SM00696 SMART IPR006616 Repeats found in Drosophila proteins. 1.9E-9 283-477 195 1
PF11901 PFAM IPR024518 Protein of unknown function (DUF3421) 1.8E-31 343-681 339 1
SM00696 SMART IPR006616 Repeats found in Drosophila proteins. 5.2E-21 502-708 207 1

7 ORFs

Contig Location Length Strand Sequence
241-723 483 1
430-678 249 -1
371-586 216 1
229-372 144 -1
198-317 120 -1
326-430 105 -1
70-174 105 -1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF326895 3.7E-32 1 110.8 0.44938272 342-705 364 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)