Transcript : dd_Smed_v6_1194_0_3 S. mediterranea

Length  1624     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_872591.1 Mus musculus heterogeneous nuclear ribonucleoprotein A2/B1 3.0E-60 102-668 567 1
NP_002128.1 Homo sapiens heterogeneous nuclear ribonucleoprotein A2/B1 2.0E-59 102-668 567 1
NP_001087778.1 Xenopus laevis MGC84815 protein 2.0E-63 90-884 795 1

18 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PS50102 PROFILE IPR000504 Eukaryotic RNA Recognition Motif (RRM) profile. 15.255 123-356 234 1
SM00360 SMART IPR000504 RNA recognition motif 1.1E-17 402-617 216 1
SSF54928 SSF RNA-binding domain, RBD 1.36E-22 369-644 276 1
PF00076 PFAM IPR000504 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.6E-15 129-305 177 1
SSF54928 SSF RNA-binding domain, RBD 6.45E-24 117-425 309 1
SM00360 SMART IPR000504 RNA recognition motif 4.1E-20 126-344 219 1
PS50102 PROFILE IPR000504 Eukaryotic RNA Recognition Motif (RRM) profile. 15.392 399-629 231 1
PTHR24012:SF339 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN A0 9.0E-75 78-896 819 1
PF00076 PFAM IPR000504 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.8E-15 405-608 204 1
PTHR24012 PANTHER FAMILY NOT NAMED 9.0E-75 78-896 819 1
G3DSA:3.30.70.330 GENE3D IPR012677   1.3E-22 369-647 279 1
G3DSA:3.30.70.330 GENE3D IPR012677   5.4E-21 90-365 276 1
PS50822 PROFILE IPR003165 Piwi domain profile. 14.511 1336-1506 171 -1
G3DSA:3.30.420.10 GENE3D IPR012337   3.3E-5 1339-1473 135 -1
PTHR22891 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 6.5E-38 1225-1500 276 -1
PTHR22891:SF0 PANTHER ARGONAUTE-1, ISOFORM A 6.5E-38 1225-1500 276 -1
SSF53098 SSF IPR012337 Ribonuclease H-like 4.3E-15 1342-1500 159 -1
PF02171 PFAM IPR003165 Piwi domain 3.4E-19 1342-1506 165 -1

Genomics

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4 ORFs

Contig Location Length Strand Sequence
81-902 822 1
708-956 249 -1
147-389 243 -1
1342-1491 150 -1

0 Treefam Sequence Features

Expression Information

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To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)