Contig : dd_Smed_v6_1194_0_1 S. mediterranea

Id  dd_Smed_v6_1194_0_1 Length  2727    Open in Genome Browser

J Browse Displayer

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_005270633.1 Homo sapiens argonaute RISC catalytic component 3 4.0E-102 1346-2656 1311 -1
XP_006502984.1 Mus musculus argonaute RISC catalytic subunit 3 7.0E-102 1346-2656 1311 -1
XP_005107588.1 Aplysia californica protein argonaute-2-like 1.0E-104 1346-2719 1374 -1

20 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF00076 PFAM IPR000504 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.8E-15 405-608 204 1
PTHR24012 PANTHER FAMILY NOT NAMED 9.0E-75 78-896 819 1
PF00076 PFAM IPR000504 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.6E-15 129-305 177 1
SM00360 SMART IPR000504 RNA recognition motif 4.1E-20 126-344 219 1
G3DSA:3.30.70.330 GENE3D IPR012677   5.4E-21 90-365 276 1
PS50102 PROFILE IPR000504 Eukaryotic RNA Recognition Motif (RRM) profile. 15.392 399-629 231 1
PTHR24012:SF339 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN A0 9.0E-75 78-896 819 1
SM00360 SMART IPR000504 RNA recognition motif 1.1E-17 402-617 216 1
SSF54928 SSF RNA-binding domain, RBD 1.36E-22 369-644 276 1
G3DSA:3.30.70.330 GENE3D IPR012677   1.3E-22 369-647 279 1
SSF54928 SSF RNA-binding domain, RBD 6.45E-24 117-425 309 1
PS50102 PROFILE IPR000504 Eukaryotic RNA Recognition Motif (RRM) profile. 15.255 123-356 234 1
G3DSA:3.40.50.2300 GENE3D   3.3E-16 2085-2606 522 -1
PTHR22891 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 3.6E-188 1227-2726 1500 -1
PS50822 PROFILE IPR003165 Piwi domain profile. 46.046 1338-2270 933 -1
PF02171 PFAM IPR003165 Piwi domain 3.3E-96 1344-2252 909 -1
PTHR22891:SF0 PANTHER ARGONAUTE-1, ISOFORM A 3.6E-188 1227-2726 1500 -1
SM00950 SMART IPR003165   1.4E-111 1338-2270 933 -1
SSF53098 SSF IPR012337 Ribonuclease H-like 6.83E-81 1344-2267 924 -1
G3DSA:3.30.420.10 GENE3D IPR012337   4.5E-27 1350-2036 687 -1

6 ORFs

Contig Location Length Strand Sequence
1223-2725 1503 -1
81-902 822 1
708-956 249 -1
147-389 243 -1
1342-1491 150 -1
1888-1992 105 -1

2 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF101510 1.7E-176 5 588.0 0.5309864 1275-2724 1450 -1
TF354206 2.2E-136 5 455.2 0.5056839 1329-2709 1381 -1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)