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Planmine Rnai Result Displayer
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Planmine Regeneration Time Course Displayer
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SequenceFeatures
3 Blast SequenceFeatures
| Blast | Target Species | Blast Description | evalue | Contig Location | Length | Strand |
|---|---|---|---|---|---|---|
| XP_005270633.1 | Homo sapiens | argonaute RISC catalytic component 3 | 4.0E-102 | 1346-2656 | 1311 | -1 |
| XP_006502984.1 | Mus musculus | argonaute RISC catalytic subunit 3 | 7.0E-102 | 1346-2656 | 1311 | -1 |
| XP_005107588.1 | Aplysia californica | protein argonaute-2-like | 1.0E-104 | 1346-2719 | 1374 | -1 |
20 Domain SequenceFeatures
| Domain | Type | InterPro | Domain Description | Score | Contig Location | Length | Strand |
|---|---|---|---|---|---|---|---|
| PF00076 | PFAM | IPR000504 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 2.8E-15 | 405-608 | 204 | 1 |
| PTHR24012 | PANTHER | FAMILY NOT NAMED | 9.0E-75 | 78-896 | 819 | 1 | |
| PF00076 | PFAM | IPR000504 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 5.6E-15 | 129-305 | 177 | 1 |
| SM00360 | SMART | IPR000504 | RNA recognition motif | 4.1E-20 | 126-344 | 219 | 1 |
| G3DSA:3.30.70.330 | GENE3D | IPR012677 | 5.4E-21 | 90-365 | 276 | 1 | |
| PS50102 | PROFILE | IPR000504 | Eukaryotic RNA Recognition Motif (RRM) profile. | 15.392 | 399-629 | 231 | 1 |
| PTHR24012:SF339 | PANTHER | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN A0 | 9.0E-75 | 78-896 | 819 | 1 | |
| SM00360 | SMART | IPR000504 | RNA recognition motif | 1.1E-17 | 402-617 | 216 | 1 |
| SSF54928 | SSF | RNA-binding domain, RBD | 1.36E-22 | 369-644 | 276 | 1 | |
| G3DSA:3.30.70.330 | GENE3D | IPR012677 | 1.3E-22 | 369-647 | 279 | 1 | |
| SSF54928 | SSF | RNA-binding domain, RBD | 6.45E-24 | 117-425 | 309 | 1 | |
| PS50102 | PROFILE | IPR000504 | Eukaryotic RNA Recognition Motif (RRM) profile. | 15.255 | 123-356 | 234 | 1 |
| G3DSA:3.40.50.2300 | GENE3D | 3.3E-16 | 2085-2606 | 522 | -1 | ||
| PTHR22891 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 2C | 3.6E-188 | 1227-2726 | 1500 | -1 | |
| PS50822 | PROFILE | IPR003165 | Piwi domain profile. | 46.046 | 1338-2270 | 933 | -1 |
| PF02171 | PFAM | IPR003165 | Piwi domain | 3.3E-96 | 1344-2252 | 909 | -1 |
| PTHR22891:SF0 | PANTHER | ARGONAUTE-1, ISOFORM A | 3.6E-188 | 1227-2726 | 1500 | -1 | |
| SM00950 | SMART | IPR003165 | 1.4E-111 | 1338-2270 | 933 | -1 | |
| SSF53098 | SSF | IPR012337 | Ribonuclease H-like | 6.83E-81 | 1344-2267 | 924 | -1 |
| G3DSA:3.30.420.10 | GENE3D | IPR012337 | 4.5E-27 | 1350-2036 | 687 | -1 |
