Contig : dd_Smed_v6_11904_0_1 S. mediterranea

Id  dd_Smed_v6_11904_0_1 Length  1777    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_727078.1 Drosophila melanogaster Ubiquitin-5E 9.0E-58 49-1614 1566 1
NP_066289.3 Homo sapiens ubiquitin C 7.0E-57 34-1614 1581 1
NP_062613.3 Mus musculus ubiquitin C 9.0E-57 34-1614 1581 1

40 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
G3DSA:3.10.20.90 GENE3D Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 1.3E-11 1177-1398 222 1
PTHR10666 PANTHER UBIQUITIN 1.7E-57 313-1611 1299 1
PS50053 PROFILE IPR000626 Ubiquitin domain profile. 13.054 1180-1404 225 1
PS50053 PROFILE IPR000626 Ubiquitin domain profile. 10.92 808-924 117 1
PS50053 PROFILE IPR000626 Ubiquitin domain profile. 16.516 283-495 213 1
SSF54236 SSF IPR029071 Ubiquitin-like 1.08E-7 808-921 114 1
G3DSA:3.10.20.90 GENE3D Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 1.9E-18 238-492 255 1
PF00240 PFAM IPR000626 Ubiquitin family 1.0E-7 808-930 123 1
PF00240 PFAM IPR000626 Ubiquitin family 1.5E-13 298-495 198 1
SSF54236 SSF IPR029071 Ubiquitin-like 1.67E-14 31-258 228 1
G3DSA:3.10.20.90 GENE3D Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 3.3E-13 40-234 195 1
SSF54236 SSF IPR029071 Ubiquitin-like 4.6E-16 283-507 225 1
SSF54236 SSF IPR029071 Ubiquitin-like 1.96E-13 1180-1395 216 1
PF00240 PFAM IPR000626 Ubiquitin family 1.0E-8 64-255 192 1
PF00240 PFAM IPR000626 Ubiquitin family 4.0E-9 1204-1395 192 1
PF00240 PFAM IPR000626 Ubiquitin family 1.2E-8 1444-1608 165 1
PR00348 PRINTS IPR019956 Ubiquitin signature 3.66E-7 313-372 60 1
PR00348 PRINTS IPR019956 Ubiquitin signature 3.66E-7 439-501 63 1
PR00348 PRINTS IPR019956 Ubiquitin signature 3.66E-7 376-435 60 1
PS50053 PROFILE IPR000626 Ubiquitin domain profile. 14.229 49-255 207 1
PS50053 PROFILE IPR000626 Ubiquitin domain profile. 16.146 511-714 204 1
PF11976 PFAM IPR022617 Ubiquitin-2 like Rad60 SUMO-like 2.7E-11 961-1161 201 1
G3DSA:3.10.20.90 GENE3D Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 4.7E-6 808-930 123 1
SSF54236 SSF IPR029071 Ubiquitin-like 7.43E-14 1360-1611 252 1
PS50053 PROFILE IPR000626 Ubiquitin domain profile. 15.079 1408-1611 204 1
PF00240 PFAM IPR000626 Ubiquitin family 2.6E-11 544-717 174 1
SM00213 SMART IPR000626 Ubiquitin homologues 4.8E-7 1180-1392 213 1
SM00213 SMART IPR000626 Ubiquitin homologues 0.084 49-264 216 1
PTHR10666:SF57 PANTHER UBIQUITIN A-52 RESIDUE RIBOSOMAL PROTEIN FUSION PR 1.7E-57 313-1611 1299 1
PS50053 PROFILE IPR000626 Ubiquitin domain profile. 14.904 961-1164 204 1

4 ORFs

Contig Location Length Strand Sequence
49-1650 1602 1
1356-1538 183 -1
335-457 123 -1
836-940 105 -1

0 Treefam SequenceFeatures

 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)