Contig : dd_Smed_v6_11802_0_1 S. mediterranea

Id  dd_Smed_v6_11802_0_1 Length  1624    Open in Genome Browser

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_031867.1 Mus musculus DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 0.0 181-1410 1230 1
NP_523533.2 Drosophila melanogaster maternal expression at 31B 0.0 175-1380 1206 1
NP_004388.2 Homo sapiens DEAD (Asp-Glu-Ala-Asp) box helicase 6 0.0 181-1410 1230 1

13 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
SM00487 SMART IPR014001 DEAD-like helicases superfamily 9.8E-47 313-900 588 1
PS51192 PROFILE IPR014001 Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 26.756 349-858 510 1
PS51194 PROFILE IPR001650 Superfamilies 1 and 2 helicase C-terminal domain profile. 24.123 889-1368 480 1
G3DSA:3.40.50.300 GENE3D IPR027417 P-loop containing nucleotide triphosphate hydrolases 8.6E-51 877-1368 492 1
PS51195 PROFILE IPR014014 DEAD-box RNA helicase Q motif profile. 9.737 256-339 84 1
PF00270 PFAM IPR011545 DEAD/DEAH box helicase 5.8E-38 331-813 483 1
SM00490 SMART IPR001650 helicase superfamily c-terminal domain 5.9E-28 1009-1251 243 1
PTHR24031:SF76 PANTHER ATP-DEPENDENT RNA HELICASE DDX6-RELATED 4.5E-282 181-1491 1311 1
PS00039 PROSITE IPR000629 DEAD-box subfamily ATP-dependent helicases signature. 0.0 697-720 24 1
PF00271 PFAM IPR001650 Helicase conserved C-terminal domain 1.1E-23 1027-1251 225 1
PTHR24031 PANTHER FAMILY NOT NAMED 4.5E-282 181-1491 1311 1
G3DSA:3.40.50.300 GENE3D IPR027417 P-loop containing nucleotide triphosphate hydrolases 8.7E-69 217-870 654 1
SSF52540 SSF IPR027417 P-loop containing nucleoside triphosphate hydrolases 1.23E-67 463-1311 849 1

5 ORFs

Contig Location Length Strand Sequence
106-1533 1428 1
1286-1474 189 1
648-755 108 -1
1257-1358 102 -1
227-328 102 -1

18 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300440 4.9E-253 1 840.6 0.75985223 183-1416 1234 1
TF300442 9.5E-81 1 271.8 0.7210591 213-1383 1171 1
TF352222 6.3E-92 1 309.2 0.6471675 231-1281 1051 1
TF300340 6.4E-66 1 222.7 0.6397783 249-1287 1039 1
TF105707 9.3E-65 1 218.1 0.64162564 252-1293 1042 1
TF300466 1.3E-126 1 422.7 0.682266 258-1365 1108 1
TF300351 3.9E-60 1 203.4 0.63793105 258-1293 1036 1
TF105714 3.5E-88 1 295.9 0.6711823 261-1350 1090 1
TF314957 3.7E-75 1 252.3 0.6711823 261-1350 1090 1
TF300332 1.2E-70 1 238.9 0.63054186 261-1284 1024 1
TF330866 5.0E-62 1 209.6 0.6360837 261-1293 1033 1
TF300471 3.9E-50 1 169.7 0.6213054 261-1269 1009 1
TF354236 6.2E-59 1 199.2 0.69889164 276-1410 1135 1
TF312949 3.5E-62 1 209.8 0.62684727 282-1299 1018 1
TF101524 2.5E-123 1 412.3 0.6360837 288-1320 1033 1
TF315215 5.4E-44 1 149.6 0.59359604 294-1257 964 1
TF328622 9.8E-52 1 174.7 0.6213054 312-1320 1009 1
TF320511 1.2E-61 1 207.4 0.6323892 327-1353 1027 1
 

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0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)