Transcript : dd_Smed_v6_117_0_1 S. mediterranea

Length  577     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_608324.1 Drosophila melanogaster Ribosomal protein S10b 5.0E-34 83-529 447 1
NP_080239.1 Mus musculus ribosomal protein S10 5.0E-33 83-415 333 1
NP_001005.1 Homo sapiens ribosomal protein S10 6.0E-33 83-415 333 1

2 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF03501 PFAM IPR005326 Plectin/S10 domain 1.6E-39 89-367 279 1
PTHR12146 PANTHER 40S RIBOSOMAL PROTEIN S10 1.1E-64 83-520 438 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

1 ORFs

Contig Location Length Strand Sequence
83-532 450 1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF319100 7.5E-69 2 232.4 0.77642983 84-531 448 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)