Contig : dd_Smed_v6_117_0_1 S. mediterranea

Id  dd_Smed_v6_117_0_1 Length  577    Open in Genome Browser

J Browse Displayer

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer


GO Displayer


3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_608324.1 Drosophila melanogaster Ribosomal protein S10b 5.0E-34 83-529 447 1
NP_080239.1 Mus musculus ribosomal protein S10 5.0E-33 83-415 333 1
NP_001005.1 Homo sapiens ribosomal protein S10 6.0E-33 83-415 333 1

2 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF03501 PFAM IPR005326 Plectin/S10 domain 1.6E-39 89-367 279 1
PTHR12146 PANTHER 40S RIBOSOMAL PROTEIN S10 1.1E-64 83-520 438 1

1 ORFs

Contig Location Length Strand Sequence
83-532 450 1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF319100 7.5E-69 2 232.4 0.77642983 84-531 448 1


0 Publications

To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)