Contig : dd_Smed_v6_116_0_1 S. mediterranea
Id  dd_Smed_v6_116_0_1 Length  515    Open in Genome Browser
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J Browse Displayer

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_080832.1 Mus musculus dynein light chain LC8-type 2 2.0E-52 146-412 267 1
NP_477408.1 Drosophila melanogaster Cytoplasmic dynein light chain 2 2.0E-51 146-412 267 1
XP_004405257.1 Odobenus rosmarus divergens dynein, light chain, LC8-type 2 1.0E-54 86-412 327 1

6 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR11886:SF33 PANTHER DYNEIN LIGHT CHAIN 1, CYTOPLASMIC 6.4E-66 92-409 318 1
G3DSA:3.30.740.10 GENE3D IPR001372 Protein Inhibitor Of Neuronal Nitric Oxide Synthase; 1.7E-45 146-409 264 1
PF01221 PFAM IPR001372 Dynein light chain type 1 9.9E-44 146-409 264 1
PS01239 PROSITE IPR019763 Dynein light chain type 1 signature. 0.0 308-349 42 1
SSF54648 SSF DLC 4.97E-41 143-409 267 1
PTHR11886 PANTHER IPR001372 DYNEIN LIGHT CHAIN 6.4E-66 92-409 318 1

3 ORFs

Contig Location Length Strand Sequence
146-412 267 1
401-514 114 -1
3-113 111 1

4 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300264 2.6E-71 2 238.8 0.50873786 147-408 262 1
TF354234 1.1E-45 2 156.0 0.50291264 153-411 259 1
TF324136 1.2E-16 2 60.0 0.4621359 168-405 238 1
TF340529 1.2E-22 5 79.7 0.49902913 146-404 259 -1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)