Transcript : dd_Smed_v6_116_0_1 S. mediterranea

Length  515     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_080832.1 Mus musculus dynein light chain LC8-type 2 2.0E-52 146-412 267 1
NP_477408.1 Drosophila melanogaster Cytoplasmic dynein light chain 2 2.0E-51 146-412 267 1
XP_004405257.1 Odobenus rosmarus divergens dynein, light chain, LC8-type 2 1.0E-54 86-412 327 1

6 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR11886:SF33 PANTHER DYNEIN LIGHT CHAIN 1, CYTOPLASMIC 6.4E-66 92-409 318 1
G3DSA:3.30.740.10 GENE3D IPR001372 Protein Inhibitor Of Neuronal Nitric Oxide Synthase; 1.7E-45 146-409 264 1
PF01221 PFAM IPR001372 Dynein light chain type 1 9.9E-44 146-409 264 1
PS01239 PROSITE IPR019763 Dynein light chain type 1 signature. 0.0 308-349 42 1
SSF54648 SSF DLC 4.97E-41 143-409 267 1
PTHR11886 PANTHER IPR001372 DYNEIN LIGHT CHAIN 6.4E-66 92-409 318 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

3 ORFs

Contig Location Length Strand Sequence
146-412 267 1
401-514 114 -1
3-113 111 1

4 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300264 2.6E-71 2 238.8 0.50873786 147-408 262 1
TF354234 1.1E-45 2 156.0 0.50291264 153-411 259 1
TF324136 1.2E-16 2 60.0 0.4621359 168-405 238 1
TF340529 1.2E-22 5 79.7 0.49902913 146-404 259 -1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)