Transcript : dd_Smed_v6_11683_0_1 S. mediterranea

Length  1134     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_006511612.1 Mus musculus carbonic anyhydrase 12 4.0E-34 208-942 735 1
NP_996808.1 Homo sapiens carbonic anhydrase XII 9.0E-34 208-945 738 1
XP_005811029.1 Xiphophorus maculatus carbonic anhydrase 4-like 4.0E-41 88-936 849 1

7 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PS00162 PROSITE IPR018338 Alpha-carbonic anhydrases signature. 0.0 460-507 48 1
SM01057 SMART IPR001148 Eukaryotic-type carbonic anhydrase 1.1E-59 154-939 786 1
SSF51069 SSF IPR001148 Carbonic anhydrase 2.36E-61 151-897 747 1
PF00194 PFAM IPR001148 Eukaryotic-type carbonic anhydrase 1.8E-52 154-900 747 1
PS51144 PROFILE IPR001148 Alpha-carbonic anhydrases profile. 54.584 148-939 792 1
G3DSA:3.10.200.10 GENE3D IPR001148 Carbonic Anhydrase II 3.5E-63 145-897 753 1
PTHR18952 PANTHER IPR023561 CARBONIC ANHYDRASE 6.1E-68 67-948 882 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

4 ORFs

Contig Location Length Strand Sequence
67-1014 948 1
639-866 228 -1
153-293 141 1
422-538 117 -1

2 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF351978 1.5E-23 1 82.1 0.5326279 216-819 604 1
TF352926 1.5E-24 1 86.8 0.59876543 225-903 679 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)