Contig : dd_Smed_v6_11683_0_1 S. mediterranea

Id  dd_Smed_v6_11683_0_1 Length  1134    Open in Genome Browser

J Browse Displayer

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

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Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_006511612.1 Mus musculus carbonic anyhydrase 12 4.0E-34 208-942 735 1
NP_996808.1 Homo sapiens carbonic anhydrase XII 9.0E-34 208-945 738 1
XP_005811029.1 Xiphophorus maculatus carbonic anhydrase 4-like 4.0E-41 88-936 849 1

7 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PS00162 PROSITE IPR018338 Alpha-carbonic anhydrases signature. 0.0 460-507 48 1
SM01057 SMART IPR001148 Eukaryotic-type carbonic anhydrase 1.1E-59 154-939 786 1
SSF51069 SSF IPR001148 Carbonic anhydrase 2.36E-61 151-897 747 1
PF00194 PFAM IPR001148 Eukaryotic-type carbonic anhydrase 1.8E-52 154-900 747 1
PS51144 PROFILE IPR001148 Alpha-carbonic anhydrases profile. 54.584 148-939 792 1
G3DSA:3.10.200.10 GENE3D IPR001148 Carbonic Anhydrase II 3.5E-63 145-897 753 1
PTHR18952 PANTHER IPR023561 CARBONIC ANHYDRASE 6.1E-68 67-948 882 1

4 ORFs

Contig Location Length Strand Sequence
67-1014 948 1
639-866 228 -1
153-293 141 1
422-538 117 -1

2 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF351978 1.5E-23 1 82.1 0.5326279 216-819 604 1
TF352926 1.5E-24 1 86.8 0.59876543 225-903 679 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)