Contig : dd_Smed_v6_1161_0_1 S. mediterranea

Id  dd_Smed_v6_1161_0_1 Length  12897    Open in Genome Browser

J Browse Displayer

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_114141.2 Homo sapiens hemicentin 1 0.0 2056-12678 10623 1
NP_001019891.2 Mus musculus hemicentin 1 0.0 2056-12678 10623 1
XP_547438.2 Canis lupus familiaris hemicentin 1 0.0 2056-12678 10623 1

268 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PS50835 PROFILE IPR007110 Ig-like domain profile. 13.511 7564-7815 252 1
PS50092 PROFILE IPR000884 Thrombospondin type-1 (TSP1) repeat profile. 13.746 10162-10326 165 1
PS50835 PROFILE IPR007110 Ig-like domain profile. 11.37 6097-6399 303 1
SSF48726 SSF Immunoglobulin 2.22E-18 6682-6993 312 1
SM00179 SMART IPR001881 Calcium-binding EGF-like domain 6.9E-7 11866-11985 120 1
SM00179 SMART IPR001881 Calcium-binding EGF-like domain 1.3E-5 12175-12309 135 1
SM00179 SMART IPR001881 Calcium-binding EGF-like domain 1.3E-9 11494-11610 117 1
SM00179 SMART IPR001881 Calcium-binding EGF-like domain 3.0E-11 12046-12171 126 1
SM00179 SMART IPR001881 Calcium-binding EGF-like domain 5.4E-10 11743-11862 120 1
SM00179 SMART IPR001881 Calcium-binding EGF-like domain 3.3E-7 11356-11490 135 1
SM00179 SMART IPR001881 Calcium-binding EGF-like domain 5.1E-6 11614-11739 126 1
SM00179 SMART IPR001881 Calcium-binding EGF-like domain 4.3E-8 11230-11352 123 1
SSF82895 SSF IPR000884 TSP-1 type 1 repeat 2.88E-14 9805-9981 177 1
PF12662 PFAM IPR026823 Complement Clr-like EGF-like 2.8E-8 11299-11364 66 1
SSF48726 SSF Immunoglobulin 2.03E-16 6397-6681 285 1
G3DSA:2.60.40.10 GENE3D IPR013783 Immunoglobulins 1.3E-17 5533-5808 276 1
G3DSA:2.60.40.10 GENE3D IPR013783 Immunoglobulins 4.4E-15 6415-6690 276 1
SSF48726 SSF Immunoglobulin 1.84E-11 3841-4143 303 1
SM00409 SMART IPR003599 Immunoglobulin 2.2E-6 3871-4128 258 1
SM00409 SMART IPR003599 Immunoglobulin 1.6 5011-5235 225 1
SM00409 SMART IPR003599 Immunoglobulin 6.0E-7 7579-7827 249 1
SM00409 SMART IPR003599 Immunoglobulin 8.0E-13 7855-8106 252 1
SM00409 SMART IPR003599 Immunoglobulin 9.4E-12 8410-8661 252 1
SM00409 SMART IPR003599 Immunoglobulin 8.5E-8 3307-3558 252 1
SM00409 SMART IPR003599 Immunoglobulin 1.8E-9 7012-7269 258 1
SM00409 SMART IPR003599 Immunoglobulin 9.4E-16 9220-9465 246 1
SM00409 SMART IPR003599 Immunoglobulin 0.0018 6433-6684 252 1
SM00409 SMART IPR003599 Immunoglobulin 3.9E-6 2740-2997 258 1
SM00409 SMART IPR003599 Immunoglobulin 0.37 2467-2712 246 1
SM00409 SMART IPR003599 Immunoglobulin 1.6E-6 5836-6087 252 1

39 ORFs

Contig Location Length Strand Sequence
271-12678 12408 1
4386-4772 387 -1
9992-10330 339 1
8754-9080 327 -1
9456-9776 321 -1
2961-3185 225 -1
6316-6531 216 -1
9138-9350 213 -1
6862-7056 195 -1
2535-2711 177 -1
1356-1526 171 1
6060-6230 171 -1
7398-7562 165 -1
5841-5999 159 -1
40-186 147 1
11327-11473 147 -1
4647-4784 138 1
11549-11686 138 -1
6741-6878 138 -1
3644-3781 138 -1
9138-9272 135 1
9818-9952 135 1
9644-9775 132 1
11801-11932 132 -1
3885-4016 132 -1
2420-2548 129 -1
37-165 129 -1
9536-9661 126 -1
12176-12298 123 1
6611-6727 117 1

0 Treefam SequenceFeatures

 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)