Contig : dd_Smed_v6_1140_0_2 S. mediterranea

Id  dd_Smed_v6_1140_0_2 Length  14121    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_523929.2 Drosophila melanogaster Dynein heavy chain 64C 0.0 184-13992 13809 1
NP_001367.2 Homo sapiens dynein, cytoplasmic 1, heavy chain 1 0.0 205-13992 13788 1
NP_084514.2 Mus musculus dynein cytoplasmic 1 heavy chain 1 0.0 205-13992 13788 1

25 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF07728 PFAM IPR011704 AAA domain (dynein-related subfamily) 4.2E-11 6682-7071 390 1
PF12774 PFAM Hydrolytic ATP binding site of dynein motor region D1 7.5E-83 5635-6333 699 1
G3DSA:3.40.50.300 GENE3D IPR027417 P-loop containing nucleotide triphosphate hydrolases 2.7E-19 5689-6117 429 1
PF12781 PFAM ATP-binding dynein motor region D5 1.6E-45 10708-11373 666 1
PF12780 PFAM IPR024317 P-loop containing dynein motor region D4 1.1E-40 8755-9384 630 1
PF08393 PFAM IPR013602 Dynein heavy chain, N-terminal region 2 6.4E-128 4003-5220 1218 1
PTHR10676 PANTHER IPR026983 DYNEIN HEAVY CHAIN FAMILY PROTEIN 0.0 28-14007 13980 1
PF03028 PFAM IPR004273 Dynein heavy chain and region D6 of dynein motor 2.0E-194 11821-13995 2175 1
SSF52540 SSF IPR027417 P-loop containing nucleoside triphosphate hydrolases 1.86E-17 6457-7119 663 1
PF12775 PFAM P-loop containing dynein motor region D3 4.4E-22 7726-8514 789 1
SSF52540 SSF IPR027417 P-loop containing nucleoside triphosphate hydrolases 8.76E-28 7768-8583 816 1
SM00382 SMART IPR003593 ATPases associated with a variety of cellular activities 0.21 5734-6153 420 1
PF08385 PFAM IPR013594 Dynein heavy chain, N-terminal region 1 4.5E-174 721-2541 1821 1
SM00382 SMART IPR003593 ATPases associated with a variety of cellular activities 1.2E-6 7792-8241 450 1
SM00382 SMART IPR003593 ATPases associated with a variety of cellular activities 0.025 8818-9315 498 1
SSF52540 SSF IPR027417 P-loop containing nucleoside triphosphate hydrolases 2.09E-22 5683-6330 648 1
PF12777 PFAM IPR024743 Microtubule-binding stalk of dynein motor 5.9E-39 9637-10629 993 1
SSF52540 SSF IPR027417 P-loop containing nucleoside triphosphate hydrolases 3.64E-26 8734-9102 369 1
SSF52540 SSF IPR027417 P-loop containing nucleoside triphosphate hydrolases 3.64E-26 9199-9630 432 1
G3DSA:3.40.50.300 GENE3D IPR027417 P-loop containing nucleotide triphosphate hydrolases 2.0E-35 6460-7170 711 1
G3DSA:3.40.50.300 GENE3D IPR027417 P-loop containing nucleotide triphosphate hydrolases 3.6E-22 8734-9102 369 1
G3DSA:3.40.50.300 GENE3D IPR027417 P-loop containing nucleotide triphosphate hydrolases 1.9E-24 7726-8295 570 1
G3DSA:3.40.50.300 GENE3D IPR027417 P-loop containing nucleotide triphosphate hydrolases 3.6E-22 9199-9369 171 1
PTHR10676:SF28 PANTHER CYTOPLASMIC DYNEIN 1 HEAVY CHAIN 1 0.0 28-14007 13980 1
SM00382 SMART IPR003593 ATPases associated with a variety of cellular activities 3.4 6670-7122 453 1

45 ORFs

Contig Location Length Strand Sequence
1-14010 14010 1
1186-1428 243 -1
2058-2297 240 -1
8925-9146 222 -1
5037-5249 213 -1
7555-7764 210 -1
8454-8645 192 -1
12677-12856 180 1
7924-8103 180 -1
3032-3211 180 -1
13407-13583 177 -1
5883-6056 174 -1
6279-6446 168 -1
12339-12503 165 1
10641-10805 165 -1
8120-8284 165 -1
1056-1220 165 -1
13064-13222 159 -1
5831-5986 156 1
5329-5484 156 -1
9436-9582 147 -1
3945-4088 144 -1
9951-10088 138 -1
471-608 138 -1
227-361 135 1
1229-1363 135 1
12923-13057 135 1
6723-6851 129 1
12849-12977 129 -1
2273-2401 129 -1

4 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF335163 5.9E-13 1 45.0 0.6894696 258-9993 9736 1
TF101165 0.0 1 8861.4 0.97032785 303-14004 13702 1
TF352520 1.8E-257 1 857.5 0.44302812 7449-13704 6256 1
TF335573 0.0 1 2010.1 0.42518234 7995-13998 6004 1
 

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0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)