Contig : dd_Smed_v6_1125_0_1 S. mediterranea

Id  dd_Smed_v6_1125_0_1 Length  1962    Open in Genome Browser

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Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_056393.2 Homo sapiens LSM14A, SCD6 homolog A (S. cerevisiae) 6.0E-32 136-408 273 1
XP_008403756.1 Poecilia reticulata LSM14A, SCD6 homolog A (S. cerevisiae) 3.0E-34 136-591 456 1
XP_008295663.1 Stegastes partitus LSM14A, SCD6 homolog A (S. cerevisiae) 1.0E-33 136-441 306 1

7 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PS51512 PROFILE IPR025762 DFDF domain profile. 9.341 1087-1194 108 1
SSF50182 SSF IPR010920 Sm-like ribonucleoproteins 3.43E-28 139-363 225 1
PS51513 PROFILE IPR025761 FFD box profile. 14.874 1255-1302 48 1
PF09532 PFAM IPR019050 FDF domain 2.9E-12 1108-1386 279 1
PTHR13586 PANTHER SCD6 PROTEIN-RELATED 7.2E-66 133-1617 1485 1
PF12701 PFAM IPR025609 Scd6-like Sm domain 9.9E-37 133-408 276 1
PTHR13586:SF0 PANTHER GH08269P 7.2E-66 133-1617 1485 1

6 ORFs

Contig Location Length Strand Sequence
133-1620 1488 1
896-1150 255 1
1367-1570 204 -1
1493-1669 177 1
1701-1820 120 -1
1196-1303 108 1

3 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF313514 3.1E-77 1 261.2 0.72986746 141-1572 1432 1
TF329702 0.0076 1 13.2 0.58154947 417-1557 1141 1
TF317210 0.0038 1 15.4 0.49745157 531-1506 976 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)