Contig : dd_Smed_v6_111_0_1 S. mediterranea

Id  dd_Smed_v6_111_0_1 Length  476    Open in Genome Browser

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Homologue Displayer

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_000980.1 Homo sapiens ribosomal protein L30 3.0E-33 131-412 282 1
NP_001037239.1 Bombyx mori ribosomal protein L30 2.0E-39 131-409 279 1
XP_970626.1 Tribolium castaneum 60S ribosomal protein L30 3.0E-39 131-412 282 1

6 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR11449:SF1 PANTHER 60S RIBOSOMAL PROTEIN L30 1.5E-55 107-421 315 1
SSF55315 SSF IPR029064 L30e-like 1.34E-30 131-409 279 1
PTHR11449 PANTHER IPR000231 RIBOSOMAL PROTEIN L30 1.5E-55 107-421 315 1
PS00993 PROSITE IPR022991 Ribosomal protein L30e signature 2. 0.0 332-391 60 1
PF01248 PFAM IPR004038 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 4.1E-23 134-406 273 1
G3DSA:3.30.1330.30 GENE3D IPR029064   1.9E-42 113-409 297 1

2 ORFs

Contig Location Length Strand Sequence
77-427 351 1
64-234 171 -1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300252 4.0E-46 2 155.5 0.60084033 129-414 286 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)