Transcript : dd_Smed_v6_111_0_1 S. mediterranea

Length  476     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_000980.1 Homo sapiens ribosomal protein L30 3.0E-33 131-412 282 1
NP_001037239.1 Bombyx mori ribosomal protein L30 2.0E-39 131-409 279 1
XP_970626.1 Tribolium castaneum 60S ribosomal protein L30 3.0E-39 131-412 282 1

6 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR11449:SF1 PANTHER 60S RIBOSOMAL PROTEIN L30 1.5E-55 107-421 315 1
SSF55315 SSF IPR029064 L30e-like 1.34E-30 131-409 279 1
PTHR11449 PANTHER IPR000231 RIBOSOMAL PROTEIN L30 1.5E-55 107-421 315 1
PS00993 PROSITE IPR022991 Ribosomal protein L30e signature 2. 0.0 332-391 60 1
PF01248 PFAM IPR004038 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 4.1E-23 134-406 273 1
G3DSA:3.30.1330.30 GENE3D IPR029064   1.9E-42 113-409 297 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

2 ORFs

Contig Location Length Strand Sequence
77-427 351 1
64-234 171 -1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300252 4.0E-46 2 155.5 0.60084033 129-414 286 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)