Transcript : dd_Smed_v6_110_0_1 S. mediterranea

Length  449     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
mRNA: AY067328.1, unknown mRNA sequence
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_651460.2 Drosophila melanogaster Ribosomal protein L34a 8.0E-40 80-397 318 1
XP_004536191.1 Ceratitis capitata 60S ribosomal protein L34-like 2.0E-42 80-397 318 1
XP_005186523.1 Musca domestica 60S ribosomal protein L34 4.0E-41 80-397 318 1

7 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR10759 PANTHER IPR008195 60S RIBOSOMAL PROTEIN L34 2.9E-52 83-394 312 1
PR01250 PRINTS IPR008195 Ribosomal protein L34 signature 5.39E-28 206-235 30 1
PR01250 PRINTS IPR008195 Ribosomal protein L34 signature 5.39E-28 113-151 39 1
PR01250 PRINTS IPR008195 Ribosomal protein L34 signature 5.39E-28 266-331 66 1
PR01250 PRINTS IPR008195 Ribosomal protein L34 signature 5.39E-28 152-202 51 1
PS01145 PROSITE IPR018065 Ribosomal protein L34e signature. 0.0 119-157 39 1
PF01199 PFAM IPR008195 Ribosomal protein L34e 6.5E-39 80-355 276 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

1 ORFs

Contig Location Length Strand Sequence
80-400 321 1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF314326 1.0E-56 2 191.1 0.8040089 84-444 361 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)