Contig : dd_Smed_v6_11037_0_1 S. mediterranea

Id  dd_Smed_v6_11037_0_1 Length  448    Open in Genome Browser

J Browse Displayer

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_080832.1 Mus musculus dynein light chain LC8-type 2 5.0E-44 109-375 267 1
NP_525075.1 Drosophila melanogaster cut up 8.0E-44 109-375 267 1
XP_004075373.1 Oryzias latipes dynein light chain 2, cytoplasmic-like 5.0E-45 109-375 267 1

5 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
G3DSA:3.30.740.10 GENE3D IPR001372 Protein Inhibitor Of Neuronal Nitric Oxide Synthase; 4.6E-42 109-372 264 1
PS01239 PROSITE IPR019763 Dynein light chain type 1 signature. 0.0 271-312 42 1
PTHR11886 PANTHER IPR001372 DYNEIN LIGHT CHAIN 5.1E-56 106-372 267 1
PF01221 PFAM IPR001372 Dynein light chain type 1 1.2E-40 109-372 264 1
SSF54648 SSF DLC 8.37E-39 100-372 273 1

3 ORFs

Contig Location Length Strand Sequence
1-375 375 1
97-324 228 -1
57-194 138 -1

4 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF354234 6.5E-41 1 140.2 0.60491073 105-375 271 1
TF300264 2.9E-61 1 205.9 0.5848214 111-372 262 1
TF324136 1.1E-18 1 66.7 0.51116073 129-357 229 1
TF340529 3.6E-15 4 55.3 0.5870536 106-370 265 -1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)