Contig : dd_Smed_v6_10990_0_1 S. mediterranea

Id  dd_Smed_v6_10990_0_1 Length  2298    Open in Genome Browser

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Planmine Rnai Result Displayer

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Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_001034485.1 Homo sapiens macrophage expressed 1 1.0E-118 196-1872 1677 1
NP_062413.2 Mus musculus pore forming protein-like 1.0E-116 112-1932 1821 1
XP_005046631.1 Ficedula albicollis macrophage expressed 1 6.0E-124 109-1872 1764 1

5 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PS51412 PROFILE IPR020864 Membrane attack complex/perforin (MACPF) domain profile. 15.04 172-1158 987 1
PTHR31463:SF1 PANTHER NOVEL PROTEIN SIMILAR TO H.SAPIENS MPEG1, MACROPHA 1.3E-187 115-2181 2067 1
PTHR31463 PANTHER FAMILY NOT NAMED 1.3E-187 115-2181 2067 1
PF01823 PFAM IPR020864 MAC/Perforin domain 6.7E-20 499-1101 603 1
SM00457 SMART IPR020864 membrane-attack complex / perforin 2.2E-4 553-1152 600 1

13 ORFs

Contig Location Length Strand Sequence
109-2211 2103 1
1427-1624 198 -1
1249-1440 192 -1
1556-1711 156 1
917-1066 150 1
1628-1771 144 -1
1775-1915 141 1
894-1034 141 -1
1531-1653 123 -1
1446-1562 117 1
297-413 117 -1
513-623 111 1
1202-1309 108 1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF331165 2.5E-200 1 666.9 0.76414275 117-1872 1756 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)