Transcript : dd_Smed_v6_10990_0_1 S. mediterranea

Length  2298     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_001034485.1 Homo sapiens macrophage expressed 1 1.0E-118 196-1872 1677 1
NP_062413.2 Mus musculus pore forming protein-like 1.0E-116 112-1932 1821 1
XP_005046631.1 Ficedula albicollis macrophage expressed 1 6.0E-124 109-1872 1764 1

5 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PS51412 PROFILE IPR020864 Membrane attack complex/perforin (MACPF) domain profile. 15.04 172-1158 987 1
PTHR31463:SF1 PANTHER NOVEL PROTEIN SIMILAR TO H.SAPIENS MPEG1, MACROPHA 1.3E-187 115-2181 2067 1
PTHR31463 PANTHER FAMILY NOT NAMED 1.3E-187 115-2181 2067 1
PF01823 PFAM IPR020864 MAC/Perforin domain 6.7E-20 499-1101 603 1
SM00457 SMART IPR020864 membrane-attack complex / perforin 2.2E-4 553-1152 600 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

13 ORFs

Contig Location Length Strand Sequence
109-2211 2103 1
1427-1624 198 -1
1249-1440 192 -1
1556-1711 156 1
917-1066 150 1
1628-1771 144 -1
1775-1915 141 1
894-1034 141 -1
1531-1653 123 -1
1446-1562 117 1
297-413 117 -1
513-623 111 1
1202-1309 108 1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF331165 2.5E-200 1 666.9 0.76414275 117-1872 1756 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)