Transcript : dd_Smed_v6_10973_0_2 S. mediterranea

Length  745     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_723797.3 Drosophila melanogaster CG31728 gene product from transcript CG31728-RC 1.0E-9 53-691 639 1
XP_003393157.1 Bombus terrestris enteropeptidase-like 8.0E-13 68-679 612 1
XP_005186258.1 Musca domestica mite allergen Der f 3-like 1.0E-12 125-679 555 1

8 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR24258 PANTHER FAMILY NOT NAMED 1.8E-17 74-688 615 1
SSF50494 SSF IPR009003 Trypsin-like serine proteases 6.34E-35 35-688 654 1
G3DSA:2.40.10.10 GENE3D Trypsin-like serine proteases 1.9E-8 80-160 81 1
PS00134 PROSITE IPR018114 Serine proteases, trypsin family, histidine active site. 0.0 170-184 15 1
G3DSA:2.40.10.10 GENE3D Trypsin-like serine proteases 1.5E-20 164-685 522 1
SM00020 SMART IPR001254 Trypsin-like serine protease 4.5E-9 74-676 603 1
PF00089 PFAM IPR001254 Trypsin 1.3E-21 83-676 594 1
PS50240 PROFILE IPR001254 Serine proteases, trypsin domain profile. 15.011 77-688 612 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

2 ORFs

Contig Location Length Strand Sequence
23-691 669 1
9-125 117 -1

7 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF327836 1.9E-6 2 26.0 0.4885906 30-393 364 1
TF327493 3.8E-15 2 53.7 0.47651008 39-393 355 1
TF327505 5.4E-14 2 50.2 0.46442953 45-390 346 1
TF351487 6.9E-9 2 32.0 0.4442953 54-384 331 1
TF327473 8.3E-22 2 76.2 0.53691274 72-471 400 1
TF326138 5.3E-18 2 64.2 0.49261746 81-447 367 1
TF327595 1.1E-18 2 65.9 0.43221477 138-459 322 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)