Contig : dd_Smed_v6_10973_0_2 S. mediterranea

Id  dd_Smed_v6_10973_0_2 Length  745    Open in Genome Browser

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Planmine Rnai Result Displayer

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Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_723797.3 Drosophila melanogaster CG31728 gene product from transcript CG31728-RC 1.0E-9 53-691 639 1
XP_003393157.1 Bombus terrestris enteropeptidase-like 8.0E-13 68-679 612 1
XP_005186258.1 Musca domestica mite allergen Der f 3-like 1.0E-12 125-679 555 1

8 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR24258 PANTHER FAMILY NOT NAMED 1.8E-17 74-688 615 1
SSF50494 SSF IPR009003 Trypsin-like serine proteases 6.34E-35 35-688 654 1
G3DSA:2.40.10.10 GENE3D Trypsin-like serine proteases 1.9E-8 80-160 81 1
PS00134 PROSITE IPR018114 Serine proteases, trypsin family, histidine active site. 0.0 170-184 15 1
G3DSA:2.40.10.10 GENE3D Trypsin-like serine proteases 1.5E-20 164-685 522 1
SM00020 SMART IPR001254 Trypsin-like serine protease 4.5E-9 74-676 603 1
PF00089 PFAM IPR001254 Trypsin 1.3E-21 83-676 594 1
PS50240 PROFILE IPR001254 Serine proteases, trypsin domain profile. 15.011 77-688 612 1

2 ORFs

Contig Location Length Strand Sequence
23-691 669 1
9-125 117 -1

7 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF327836 1.9E-6 2 26.0 0.4885906 30-393 364 1
TF327493 3.8E-15 2 53.7 0.47651008 39-393 355 1
TF327505 5.4E-14 2 50.2 0.46442953 45-390 346 1
TF351487 6.9E-9 2 32.0 0.4442953 54-384 331 1
TF327473 8.3E-22 2 76.2 0.53691274 72-471 400 1
TF326138 5.3E-18 2 64.2 0.49261746 81-447 367 1
TF327595 1.1E-18 2 65.9 0.43221477 138-459 322 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)