Transcript : dd_Smed_v6_1096_0_1 S. mediterranea

Length  733     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
mRNA: KM981941.1, NME/NM23 nucleoside diphosphate kinase 1 mRNA - partial cds
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_032730.1 Mus musculus NME/NM23 nucleoside diphosphate kinase 1 2.0E-62 105-548 444 1
NP_000260.1 Homo sapiens NME/NM23 nucleoside diphosphate kinase 1 4.0E-62 105-548 444 1
XP_002371484.1 Toxoplasma gondii ME49 nucleoside diphosphate kinase, putative 6.0E-66 102-548 447 1

12 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
G3DSA:3.30.70.141 GENE3D IPR001564   1.9E-60 99-542 444 1
PR01243 PRINTS IPR001564 Nucleoside diphosphate kinase signature 1.6E-50 303-353 51 1
SSF54919 SSF IPR001564 Nucleoside diphosphate kinase, NDK 7.2E-56 99-539 441 1
PS00469 PROSITE IPR023005 Nucleoside diphosphate kinases active site. 0.0 435-458 24 1
PTHR11349:SF46 PANTHER NUCLEOSIDE DIPHOSPHATE KINASE 1.1E-89 102-545 444 1
PTHR11349 PANTHER NUCLEOSIDE DIPHOSPHATE KINASE 1.1E-89 102-545 444 1
PR01243 PRINTS IPR001564 Nucleoside diphosphate kinase signature 1.6E-50 366-413 48 1
SM00562 SMART IPR001564   3.7E-77 102-512 411 1
PF00334 PFAM IPR001564 Nucleoside diphosphate kinase 4.9E-51 105-506 402 1
PR01243 PRINTS IPR001564 Nucleoside diphosphate kinase signature 1.6E-50 111-176 66 1
PR01243 PRINTS IPR001564 Nucleoside diphosphate kinase signature 1.6E-50 243-299 57 1
PR01243 PRINTS IPR001564 Nucleoside diphosphate kinase signature 1.6E-50 435-491 57 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

3 ORFs

Contig Location Length Strand Sequence
48-548 501 1
463-603 141 1
630-731 102 -1

3 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF106374 6.9E-22 3 76.1 0.5497954 96-498 403 1
TF106373 3.6E-90 3 301.2 0.5989086 105-543 439 1
TF354225 9.6E-18 3 62.9 0.50477487 123-492 370 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)