Contig : dd_Smed_v6_1096_0_1 S. mediterranea

Id  dd_Smed_v6_1096_0_1 Length  733    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_032730.1 Mus musculus NME/NM23 nucleoside diphosphate kinase 1 2.0E-62 105-548 444 1
NP_000260.1 Homo sapiens NME/NM23 nucleoside diphosphate kinase 1 4.0E-62 105-548 444 1
XP_002371484.1 Toxoplasma gondii ME49 nucleoside diphosphate kinase, putative 6.0E-66 102-548 447 1

12 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
G3DSA:3.30.70.141 GENE3D IPR001564   1.9E-60 99-542 444 1
PR01243 PRINTS IPR001564 Nucleoside diphosphate kinase signature 1.6E-50 303-353 51 1
SSF54919 SSF IPR001564 Nucleoside diphosphate kinase, NDK 7.2E-56 99-539 441 1
PS00469 PROSITE IPR023005 Nucleoside diphosphate kinases active site. 0.0 435-458 24 1
PTHR11349:SF46 PANTHER NUCLEOSIDE DIPHOSPHATE KINASE 1.1E-89 102-545 444 1
PTHR11349 PANTHER NUCLEOSIDE DIPHOSPHATE KINASE 1.1E-89 102-545 444 1
PR01243 PRINTS IPR001564 Nucleoside diphosphate kinase signature 1.6E-50 366-413 48 1
SM00562 SMART IPR001564   3.7E-77 102-512 411 1
PF00334 PFAM IPR001564 Nucleoside diphosphate kinase 4.9E-51 105-506 402 1
PR01243 PRINTS IPR001564 Nucleoside diphosphate kinase signature 1.6E-50 111-176 66 1
PR01243 PRINTS IPR001564 Nucleoside diphosphate kinase signature 1.6E-50 243-299 57 1
PR01243 PRINTS IPR001564 Nucleoside diphosphate kinase signature 1.6E-50 435-491 57 1

3 ORFs

Contig Location Length Strand Sequence
48-548 501 1
463-603 141 1
630-731 102 -1

3 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF106374 6.9E-22 3 76.1 0.5497954 96-498 403 1
TF106373 3.6E-90 3 301.2 0.5989086 105-543 439 1
TF354225 9.6E-18 3 62.9 0.50477487 123-492 370 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)