Contig : dd_Smed_v6_10947_0_2 S. mediterranea

Id  dd_Smed_v6_10947_0_2 Length  1522    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_033472.1 Mus musculus tubulin, alpha 3A 0.0 79-1398 1320 1
NP_476772.1 Drosophila melanogaster alpha-Tubulin at 84B 0.0 79-1395 1317 1
NP_989129.1 Xenopus (Silurana) tropicalis tubulin, alpha 1a 0.0 79-1398 1320 1

34 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
G3DSA:1.10.287.600 GENE3D IPR023123 Helix hairpin bin 2.3E-30 1228-1392 165 1
SM00865 SMART IPR018316 Tubulin/FtsZ family, C-terminal domain 2.7E-60 820-1254 435 1
G3DSA:3.40.50.1440 GENE3D IPR003008   7.6E-134 79-879 801 1
G3DSA:3.30.1330.20 GENE3D IPR018316   2.4E-57 886-1224 339 1
PS00227 PROSITE IPR017975 Tubulin subunits alpha, beta, and gamma signature. 0.0 502-519 18 1
PF00091 PFAM IPR003008 Tubulin/FtsZ family, GTPase domain 1.0E-69 85-750 666 1
PR01161 PRINTS IPR000217 Tubulin signature 3.58E-91 235-291 57 1
PR01161 PRINTS IPR000217 Tubulin signature 3.58E-91 478-531 54 1
PR01161 PRINTS IPR000217 Tubulin signature 3.58E-91 106-165 60 1
PR01161 PRINTS IPR000217 Tubulin signature 3.58E-91 535-597 63 1
PR01161 PRINTS IPR000217 Tubulin signature 3.58E-91 400-471 72 1
PR01161 PRINTS IPR000217 Tubulin signature 3.58E-91 1216-1299 84 1
PR01161 PRINTS IPR000217 Tubulin signature 3.58E-91 361-393 33 1
PR01161 PRINTS IPR000217 Tubulin signature 3.58E-91 610-648 39 1
PR01161 PRINTS IPR000217 Tubulin signature 3.58E-91 652-711 60 1
SSF52490 SSF IPR003008 Tubulin nucleotide-binding domain-like 1.7E-101 79-807 729 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 6.85E-121 436-459 24 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 6.85E-121 130-174 45 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 6.85E-121 1156-1212 57 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 6.85E-121 1231-1278 48 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 6.85E-121 559-591 33 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 6.85E-121 718-753 36 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 6.85E-121 1342-1389 48 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 6.85E-121 1117-1155 39 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 6.85E-121 520-555 36 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 6.85E-121 898-942 45 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 6.85E-121 211-249 39 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 6.85E-121 340-378 39 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 6.85E-121 1039-1101 63 1
PTHR11588:SF65 PANTHER TUBULIN ALPHA-3C/D CHAIN 0.0 79-1425 1347 1

9 ORFs

Contig Location Length Strand Sequence
79-1431 1353 1
1145-1462 318 -1
34-261 228 -1
1004-1162 159 1
462-578 117 1
924-1028 105 -1
87-188 102 1
101-202 102 1
1373-1474 102 1

4 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF330882 7.6E-80 1 268.2 0.86202365 81-1392 1312 1
TF300477 2.1E-80 1 269.7 0.85413927 84-1383 1300 1
TF329833 1.0E-28 1 98.6 0.4461235 90-768 679 1
TF317794 0.0075 6 11.4 0.74244416 289-1420 1132 -1
 

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To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)