Contig : dd_Smed_v6_10947_0_1 S. mediterranea

Id  dd_Smed_v6_10947_0_1 Length  1561    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_033472.1 Mus musculus tubulin, alpha 3A 0.0 79-1395 1317 1
NP_476772.1 Drosophila melanogaster alpha-Tubulin at 84B 0.0 79-1395 1317 1
NP_989129.1 Xenopus (Silurana) tropicalis tubulin, alpha 1a 0.0 79-1395 1317 1

34 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
SM00865 SMART IPR018316 Tubulin/FtsZ family, C-terminal domain 3.9E-54 820-1254 435 1
G3DSA:3.40.50.1440 GENE3D IPR003008   7.5E-134 79-879 801 1
PF00091 PFAM IPR003008 Tubulin/FtsZ family, GTPase domain 1.0E-69 85-750 666 1
PS00227 PROSITE IPR017975 Tubulin subunits alpha, beta, and gamma signature. 0.0 502-519 18 1
PR01161 PRINTS IPR000217 Tubulin signature 2.4E-90 652-711 60 1
PR01161 PRINTS IPR000217 Tubulin signature 2.4E-90 106-165 60 1
PR01161 PRINTS IPR000217 Tubulin signature 2.4E-90 400-471 72 1
PR01161 PRINTS IPR000217 Tubulin signature 2.4E-90 478-531 54 1
PR01161 PRINTS IPR000217 Tubulin signature 2.4E-90 235-291 57 1
PR01161 PRINTS IPR000217 Tubulin signature 2.4E-90 1216-1299 84 1
PR01161 PRINTS IPR000217 Tubulin signature 2.4E-90 535-597 63 1
PR01161 PRINTS IPR000217 Tubulin signature 2.4E-90 610-648 39 1
PR01161 PRINTS IPR000217 Tubulin signature 2.4E-90 361-393 33 1
SSF52490 SSF IPR003008 Tubulin nucleotide-binding domain-like 1.7E-101 79-807 729 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 1.56E-108 1342-1389 48 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 1.56E-108 211-249 39 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 1.56E-108 1117-1155 39 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 1.56E-108 130-174 45 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 1.56E-108 1156-1212 57 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 1.56E-108 1231-1278 48 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 1.56E-108 520-555 36 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 1.56E-108 436-459 24 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 1.56E-108 1039-1101 63 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 1.56E-108 559-591 33 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 1.56E-108 898-942 45 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 1.56E-108 340-378 39 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 1.56E-108 718-753 36 1
PF03953 PFAM IPR018316 Tubulin C-terminal domain 1.3E-49 865-1251 387 1
PTHR11588:SF65 PANTHER TUBULIN ALPHA-3C/D CHAIN 0.0 79-1419 1341 1
PTHR11588 PANTHER IPR000217 TUBULIN 0.0 79-1419 1341 1

7 ORFs

Contig Location Length Strand Sequence
79-1422 1344 1
34-261 228 -1
1004-1135 132 1
462-578 117 1
924-1028 105 -1
87-188 102 1
101-202 102 1

3 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF330882 1.2E-75 1 254.3 0.8327995 81-1380 1300 1
TF300477 1.1E-81 1 273.9 0.8347213 84-1386 1303 1
TF329833 1.1E-28 1 98.5 0.4349776 90-768 679 1
 

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0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)