Transcript : dd_Smed_v6_10921_0_1 S. mediterranea

Length  1888     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
mRNA: KY348682.1, hypothetical protein Smed-ski mRNA - complete cds
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_003027.1 Homo sapiens SKI proto-oncogene 4.0E-37 402-1160 759 1
NP_035515.2 Mus musculus ski sarcoma viral oncogene homolog (avian) 1.0E-36 402-1160 759 1
XP_797484.3 Strongylocentrotus purpuratus ski oncogene-like 4.0E-39 399-1088 690 1

9 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF02437 PFAM IPR003380 SKI/SNO/DAC family 3.7E-20 402-692 291 1
SSF46955 SSF IPR009061 Putative DNA-binding domain 4.76E-18 408-689 282 1
SSF63763 SSF IPR010919 SAND domain-like 4.71E-25 789-1037 249 1
G3DSA:3.10.260.20 GENE3D IPR003380 Putative DNA-binding domain 4.3E-22 402-692 291 1
PTHR10005 PANTHER IPR023216 SKI ONCOGENE-RELATED 2.0E-61 399-1085 687 1
SM01046 SMART IPR014890 c-SKI Smad4 binding domain 2.5E-22 786-1088 303 1
PF08782 PFAM IPR014890 c-SKI Smad4 binding domain 1.4E-26 789-1085 297 1
G3DSA:3.10.390.10 GENE3D IPR010919 SAND domain 3.2E-26 786-1085 300 1
PTHR10005:SF2 PANTHER SNO ONCOGENE, ISOFORM B 2.0E-61 399-1085 687 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

6 ORFs

Contig Location Length Strand Sequence
90-1655 1566 1
1069-1266 198 1
1205-1342 138 1
1292-1414 123 -1
455-571 117 -1
250-357 108 1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF324133 3.5E-47 3 161.9 0.5868644 435-1542 1108 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)