Contig : dd_Smed_v6_10921_0_1 S. mediterranea

Id  dd_Smed_v6_10921_0_1 Length  1888    Open in Genome Browser

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Planmine Rnai Result Displayer

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Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_003027.1 Homo sapiens SKI proto-oncogene 4.0E-37 402-1160 759 1
NP_035515.2 Mus musculus ski sarcoma viral oncogene homolog (avian) 1.0E-36 402-1160 759 1
XP_797484.3 Strongylocentrotus purpuratus ski oncogene-like 4.0E-39 399-1088 690 1

9 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF02437 PFAM IPR003380 SKI/SNO/DAC family 3.7E-20 402-692 291 1
SSF46955 SSF IPR009061 Putative DNA-binding domain 4.76E-18 408-689 282 1
SSF63763 SSF IPR010919 SAND domain-like 4.71E-25 789-1037 249 1
G3DSA:3.10.260.20 GENE3D IPR003380 Putative DNA-binding domain 4.3E-22 402-692 291 1
PTHR10005 PANTHER IPR023216 SKI ONCOGENE-RELATED 2.0E-61 399-1085 687 1
SM01046 SMART IPR014890 c-SKI Smad4 binding domain 2.5E-22 786-1088 303 1
PF08782 PFAM IPR014890 c-SKI Smad4 binding domain 1.4E-26 789-1085 297 1
G3DSA:3.10.390.10 GENE3D IPR010919 SAND domain 3.2E-26 786-1085 300 1
PTHR10005:SF2 PANTHER SNO ONCOGENE, ISOFORM B 2.0E-61 399-1085 687 1

6 ORFs

Contig Location Length Strand Sequence
90-1655 1566 1
1069-1266 198 1
1205-1342 138 1
1292-1414 123 -1
455-571 117 -1
250-357 108 1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF324133 3.5E-47 3 161.9 0.5868644 435-1542 1108 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)