Transcript : dd_Smed_v6_108_0_1 S. mediterranea

Length  905     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
EST: AY067189.1, clone HB.15.4h unknown mRNA sequence
AY967668.1, clone NBE.7.02A mRNA sequence
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_524726.1 Drosophila melanogaster Ribosomal protein L8 1.0E-128 86-835 750 1
NP_000964.1 Homo sapiens ribosomal protein L8 1.0E-127 86-847 762 1
XP_002740227.1 Saccoglossus kowalevskii 60S ribosomal protein L8-like 8.0E-137 86-847 762 1

9 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
SSF50249 SSF IPR012340 Nucleic acid-binding proteins 7.54E-22 74-373 300 1
G3DSA:2.30.30.30 GENE3D IPR014722   2.8E-27 353-589 237 1
PF00181 PFAM IPR022666 Ribosomal Proteins L2, RNA binding domain 5.9E-17 116-352 237 1
SSF50104 SSF IPR008991 Translation proteins SH3-like domain 1.76E-54 380-817 438 1
PF03947 PFAM IPR022669 Ribosomal Proteins L2, C-terminal domain 9.9E-44 371-769 399 1
PTHR13691 PANTHER IPR002171 RIBOSOMAL PROTEIN L2 1.9E-179 86-853 768 1
PTHR13691:SF16 PANTHER 60S RIBOSOMAL PROTEIN L8 1.9E-179 86-853 768 1
G3DSA:2.40.50.140 GENE3D IPR012340 Nucleic acid-binding proteins 6.6E-19 86-340 255 1
G3DSA:4.10.950.10 GENE3D IPR014726 Ribosomal protein L2, domain 3 9.1E-35 593-814 222 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

5 ORFs

Contig Location Length Strand Sequence
86-856 771 1
569-739 171 -1
736-903 168 -1
375-494 120 1
128-235 108 -1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300748 8.6E-181 2 601.4 0.84640884 87-852 766 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

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To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)