Contig : dd_Smed_v6_108_0_1 S. mediterranea

Id  dd_Smed_v6_108_0_1 Length  905    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_524726.1 Drosophila melanogaster Ribosomal protein L8 1.0E-128 86-835 750 1
NP_000964.1 Homo sapiens ribosomal protein L8 1.0E-127 86-847 762 1
XP_002740227.1 Saccoglossus kowalevskii 60S ribosomal protein L8-like 8.0E-137 86-847 762 1

9 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
SSF50249 SSF IPR012340 Nucleic acid-binding proteins 7.54E-22 74-373 300 1
G3DSA:2.30.30.30 GENE3D IPR014722   2.8E-27 353-589 237 1
PF00181 PFAM IPR022666 Ribosomal Proteins L2, RNA binding domain 5.9E-17 116-352 237 1
SSF50104 SSF IPR008991 Translation proteins SH3-like domain 1.76E-54 380-817 438 1
PF03947 PFAM IPR022669 Ribosomal Proteins L2, C-terminal domain 9.9E-44 371-769 399 1
PTHR13691 PANTHER IPR002171 RIBOSOMAL PROTEIN L2 1.9E-179 86-853 768 1
PTHR13691:SF16 PANTHER 60S RIBOSOMAL PROTEIN L8 1.9E-179 86-853 768 1
G3DSA:2.40.50.140 GENE3D IPR012340 Nucleic acid-binding proteins 6.6E-19 86-340 255 1
G3DSA:4.10.950.10 GENE3D IPR014726 Ribosomal protein L2, domain 3 9.1E-35 593-814 222 1

5 ORFs

Contig Location Length Strand Sequence
86-856 771 1
569-739 171 -1
736-903 168 -1
375-494 120 1
128-235 108 -1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300748 8.6E-181 2 601.4 0.84640884 87-852 766 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)