Transcript : dd_Smed_v6_1071_0_1 S. mediterranea

Length  2300     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_006525092.1 Mus musculus vitrin 2.0E-15 166-726 561 1
NP_001087052.1 Xenopus laevis von Willebrand factor A domain-containing protein 2 1.0E-16 136-774 639 1
XP_006272939.1 Alligator mississippiensis vitrin 2.0E-16 166-726 561 1

9 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PS50234 PROFILE IPR002035 VWFA domain profile. 25.116 190-696 507 1
G3DSA:3.40.50.410 GENE3D IPR002035   3.1E-39 190-714 525 1
PF00092 PFAM IPR002035 von Willebrand factor type A domain 7.0E-32 193-690 498 1
PTHR22992 PANTHER VON WILENBRAND FACTOR RELATED 3.2E-37 193-720 528 1
SSF53300 SSF IPR002035 vWA-like 9.04E-40 163-714 552 1
PR00453 PRINTS Von Willebrand factor type A domain signature 1.22E-8 493-516 24 1
PR00453 PRINTS Von Willebrand factor type A domain signature 1.22E-8 187-237 51 1
PR00453 PRINTS Von Willebrand factor type A domain signature 1.22E-8 304-345 42 1
SM00327 SMART IPR002035 von Willebrand factor (vWF) type A domain 1.0E-27 184-711 528 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

9 ORFs

Contig Location Length Strand Sequence
52-2298 2247 1
637-939 303 -1
324-623 300 -1
1835-2068 234 -1
1221-1358 138 -1
1457-1591 135 -1
1434-1568 135 -1
1370-1489 120 1
2099-2203 105 -1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF330078 1.3E-29 1 102.6 0.67478263 195-1746 1552 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)