Transcript : dd_Smed_v6_106_0_1 S. mediterranea

Length  1511     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
EST: AY967660.1, clone NBE.6.11D mRNA sequence

Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_005110289.1 Aplysia californica 40S ribosomal protein S27-like 1.0E-36 1216-1467 252 1
NP_001037277.1 Bombyx mori ribosomal protein S27 2.0E-36 1216-1467 252 1
XP_008473447.1 Diaphorina citri 40S ribosomal protein S27 2.0E-35 1216-1467 252 1

5 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR11594 PANTHER IPR000592 40S RIBOSOMAL PROTEIN S27 6.7E-61 1207-1464 258 1
G3DSA: GENE3D IPR023407 Zn-binding ribosomal proteins 3.1E-35 1297-1461 165 1
PF01667 PFAM IPR000592 Ribosomal protein S27 1.4E-28 1297-1458 162 1
PS01168 PROSITE IPR000592 Ribosomal protein S27e signature. 0.0 1321-1416 96 1
SSF57829 SSF IPR011332 Zn-binding ribosomal proteins 2.75E-22 1297-1458 162 1


Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

4 ORFs

Contig Location Length Strand Sequence
1216-1467 252 1
158-385 228 -1
1323-1475 153 1
949-1065 117 -1

0 Treefam Sequence Features

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer

To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)