Contig : dd_Smed_v6_106_0_1 S. mediterranea

Id  dd_Smed_v6_106_0_1 Length  1511    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_005110289.1 Aplysia californica 40S ribosomal protein S27-like 1.0E-36 1216-1467 252 1
NP_001037277.1 Bombyx mori ribosomal protein S27 2.0E-36 1216-1467 252 1
XP_008473447.1 Diaphorina citri 40S ribosomal protein S27 2.0E-35 1216-1467 252 1

5 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR11594 PANTHER IPR000592 40S RIBOSOMAL PROTEIN S27 6.7E-61 1207-1464 258 1
G3DSA:2.20.25.100 GENE3D IPR023407 Zn-binding ribosomal proteins 3.1E-35 1297-1461 165 1
PF01667 PFAM IPR000592 Ribosomal protein S27 1.4E-28 1297-1458 162 1
PS01168 PROSITE IPR000592 Ribosomal protein S27e signature. 0.0 1321-1416 96 1
SSF57829 SSF IPR011332 Zn-binding ribosomal proteins 2.75E-22 1297-1458 162 1

4 ORFs

Contig Location Length Strand Sequence
1216-1467 252 1
158-385 228 -1
1323-1475 153 1
949-1065 117 -1

0 Treefam SequenceFeatures

 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)