Contig : dd_Smed_v6_10594_0_1 S. mediterranea

Id  dd_Smed_v6_10594_0_1 Length  651    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_001657943.1 Aedes aegypti histone H1, putative 8.0E-11 73-300 228 1
XP_002738506.1 Saccoglossus kowalevskii histone H1E-like 3.0E-10 70-276 207 1
XP_003392966.1 Bombus terrestris histone H1-like 3.0E-10 73-279 207 1

12 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PR00624 PRINTS IPR005819 Histone H5 signature 3.24E-16 226-297 72 1
PR00624 PRINTS IPR005819 Histone H5 signature 3.24E-16 16-78 63 1
PR00624 PRINTS IPR005819 Histone H5 signature 3.24E-16 337-378 42 1
PR00624 PRINTS IPR005819 Histone H5 signature 3.24E-16 517-573 57 1
G3DSA:1.10.10.10 GENE3D IPR011991 winged helixrepressor DNA binding domain 3.1E-22 40-300 261 1
PTHR11467 PANTHER HISTONE H1/H5 1.2E-18 25-612 588 1
PR00624 PRINTS IPR005819 Histone H5 signature 3.24E-16 97-147 51 1
PR00624 PRINTS IPR005819 Histone H5 signature 3.24E-16 451-501 51 1
PS51504 PROFILE IPR005818 Linker histone H1/H5 globular (H15) domain profile. 22.658 55-279 225 1
PF00538 PFAM IPR005818 linker histone H1 and H5 family 8.9E-19 55-276 222 1
SSF46785 SSF Winged helixDNA-binding domain 2.67E-18 49-306 258 1
SM00526 SMART IPR005818 Domain in histone families 1 and 5 6.9E-19 49-246 198 1

1 ORFs

Contig Location Length Strand Sequence
1-615 615 1

0 Treefam SequenceFeatures

 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)