Contig : dd_Smed_v6_1047_0_1 S. mediterranea

Id  dd_Smed_v6_1047_0_1 Length  1233    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_001116077.1 Mus musculus DAZ associated protein 1 2.0E-40 121-624 504 1
NP_733829.1 Homo sapiens DAZ associated protein 1 5.0E-40 121-624 504 1
XP_005999924.1 Latimeria chalumnae DAZ associated protein 1 9.0E-43 118-618 501 1

12 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
SM00360 SMART IPR000504 RNA recognition motif 2.3E-21 133-360 228 1
SSF54928 SSF RNA-binding domain, RBD 1.75E-19 379-681 303 1
SSF54928 SSF RNA-binding domain, RBD 3.63E-21 121-366 246 1
PTHR24012:SF0 PANTHER FI20028P1 3.7E-62 121-1125 1005 1
PF00076 PFAM IPR000504 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7.4E-17 136-330 195 1
SM00360 SMART IPR000504 RNA recognition motif 1.8E-17 391-606 216 1
G3DSA:3.30.70.330 GENE3D IPR012677   2.0E-21 130-369 240 1
PS50102 PROFILE IPR000504 Eukaryotic RNA Recognition Motif (RRM) profile. 16.568 130-372 243 1
G3DSA:3.30.70.330 GENE3D IPR012677   3.7E-20 385-660 276 1
PS50102 PROFILE IPR000504 Eukaryotic RNA Recognition Motif (RRM) profile. 16.04 388-618 231 1
PTHR24012 PANTHER FAMILY NOT NAMED 3.7E-62 121-1125 1005 1
PF00076 PFAM IPR000504 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.7E-15 394-564 171 1

7 ORFs

Contig Location Length Strand Sequence
100-1161 1062 1
641-895 255 1
1035-1232 198 -1
696-839 144 1
799-939 141 -1
608-739 132 -1
1001-1108 108 1

2 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF315657 4.0E-22 1 78.4 0.757502 162-1095 934 1
TF313377 5.3E-7 1 28.4 0.5774534 402-1113 712 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)