Transcript : dd_Smed_v6_1040_0_1 S. mediterranea

Length  761     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_611544.1 Drosophila melanogaster CG10527 gene product from transcript CG10527-RA 2.0E-25 191-601 411 1
XP_005178844.1 Musca domestica C3 and PZP-like alpha-2-macroglobulin domain-containing protein 8 2.0E-27 158-607 450 1
XP_002082422.1 Drosophila simulans GD25227 gene product from transcript GD25227-RA 2.0E-26 191-601 411 1

4 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
SM00696 SMART IPR006616 Repeats found in Drosophila proteins. 7.7E-6 182-376 195 1
SM00696 SMART IPR006616 Repeats found in Drosophila proteins. 2.3E-30 401-610 210 1
PF11901 PFAM IPR024518 Protein of unknown function (DUF3421) 1.8E-34 248-586 339 1
PTHR31649 PANTHER FAMILY NOT NAMED 1.3E-47 134-607 474 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

3 ORFs

Contig Location Length Strand Sequence
152-616 465 1
386-580 195 -1
543-683 141 1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF326895 7.1E-47 2 159.5 0.4822602 249-615 367 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)