Contig : dd_Smed_v6_1039_0_1 S. mediterranea

Id  dd_Smed_v6_1039_0_1 Length  1154    Open in Genome Browser

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Genes

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SequenceFeatures

2 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_003375704.1 Trichinella spiralis heat shock protein beta-1 5.0E-7 550-936 387 1
XP_002411887.1 Ixodes scapularis secreted salivary gland peptide, putative 3.0E-6 619-963 345 1

6 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PS01031 PROFILE IPR002068 Heat shock hsp20 proteins family profile. 10.417 625-882 258 1
SSF49764 SSF IPR008978 HSP20-like chaperones 1.94E-5 661-888 228 1
PF00011 PFAM IPR002068 Hsp20/alpha crystallin family 9.2E-9 649-933 285 1
PF00011 PFAM IPR002068 Hsp20/alpha crystallin family 1.4E-6 349-513 165 1
PS01031 PROFILE IPR002068 Heat shock hsp20 proteins family profile. 8.872 169-474 306 1
G3DSA:2.60.40.790 GENE3D IPR008978   3.6E-4 274-516 243 1

4 ORFs

Contig Location Length Strand Sequence
163-972 810 1
457-720 264 -1
202-420 219 -1
701-802 102 1

0 Treefam SequenceFeatures

 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)