Transcript : dd_Smed_v6_1039_0_1 S. mediterranea

Length  1154     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

2 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_003375704.1 Trichinella spiralis heat shock protein beta-1 5.0E-7 550-936 387 1
XP_002411887.1 Ixodes scapularis secreted salivary gland peptide, putative 3.0E-6 619-963 345 1

6 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PS01031 PROFILE IPR002068 Heat shock hsp20 proteins family profile. 10.417 625-882 258 1
SSF49764 SSF IPR008978 HSP20-like chaperones 1.94E-5 661-888 228 1
PF00011 PFAM IPR002068 Hsp20/alpha crystallin family 9.2E-9 649-933 285 1
PF00011 PFAM IPR002068 Hsp20/alpha crystallin family 1.4E-6 349-513 165 1
PS01031 PROFILE IPR002068 Heat shock hsp20 proteins family profile. 8.872 169-474 306 1
G3DSA:2.60.40.790 GENE3D IPR008978   3.6E-4 274-516 243 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

4 ORFs

Contig Location Length Strand Sequence
163-972 810 1
457-720 264 -1
202-420 219 -1
701-802 102 1

0 Treefam Sequence Features

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)