Contig : dd_Smed_v6_1034_0_1 S. mediterranea

Id  dd_Smed_v6_1034_0_1 Length  2381    Open in Genome Browser

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_031867.1 Mus musculus DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 0.0 157-1386 1230 1
NP_523533.2 Drosophila melanogaster maternal expression at 31B 0.0 82-1353 1272 1
NP_004388.2 Homo sapiens DEAD (Asp-Glu-Ala-Asp) box helicase 6 0.0 85-1368 1284 1

13 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PS51194 PROFILE IPR001650 Superfamilies 1 and 2 helicase C-terminal domain profile. 23.575 862-1341 480 1
G3DSA:3.40.50.300 GENE3D IPR027417 P-loop containing nucleotide triphosphate hydrolases 7.0E-50 850-1338 489 1
PTHR24031 PANTHER FAMILY NOT NAMED 5.1E-293 121-1584 1464 1
PS51195 PROFILE IPR014014 DEAD-box RNA helicase Q motif profile. 10.305 229-312 84 1
PF00271 PFAM IPR001650 Helicase conserved C-terminal domain 6.9E-24 1000-1224 225 1
SM00490 SMART IPR001650 helicase superfamily c-terminal domain 2.2E-27 982-1224 243 1
PF00270 PFAM IPR011545 DEAD/DEAH box helicase 2.4E-38 304-795 492 1
SM00487 SMART IPR014001 DEAD-like helicases superfamily 4.2E-46 286-873 588 1
SSF52540 SSF IPR027417 P-loop containing nucleoside triphosphate hydrolases 1.36E-67 433-1287 855 1
PTHR24031:SF76 PANTHER ATP-DEPENDENT RNA HELICASE DDX6-RELATED 5.1E-293 121-1584 1464 1
PS00039 PROSITE IPR000629 DEAD-box subfamily ATP-dependent helicases signature. 0.0 670-693 24 1
G3DSA:3.40.50.300 GENE3D IPR027417 P-loop containing nucleotide triphosphate hydrolases 2.3E-70 196-840 645 1
PS51192 PROFILE IPR014001 Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 27.982 322-831 510 1

6 ORFs

Contig Location Length Strand Sequence
82-1596 1515 1
1362-1523 162 -1
1346-1483 138 1
650-778 129 -1
1480-1605 126 -1
168-275 108 -1

18 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300440 1.4E-262 1 872.2 0.5157497 159-1386 1228 1
TF315215 5.5E-55 1 186.1 0.43889123 192-1236 1045 1
TF352222 7.7E-96 1 322.1 0.44141117 204-1254 1051 1
TF300442 4.3E-84 1 282.8 0.48173037 213-1359 1147 1
TF300340 1.7E-65 1 221.3 0.44015118 219-1266 1048 1
TF300466 7.1E-130 1 433.5 0.4640907 231-1335 1105 1
TF314957 4.8E-75 1 251.9 0.4552709 234-1317 1084 1
TF300332 7.5E-70 1 236.2 0.42629147 234-1248 1015 1
TF300471 6.9E-64 1 215.2 0.4250315 234-1245 1012 1
TF328622 5.1E-46 1 155.7 0.4451911 234-1293 1060 1
TF300351 3.7E-53 1 180.3 0.43637127 237-1275 1039 1
TF105707 2.3E-70 1 236.6 0.43133137 240-1266 1027 1
TF300527 4.6E-61 1 206.1 0.43133137 243-1269 1027 1
TF354236 8.4E-49 1 165.6 0.45275095 255-1332 1078 1
TF101524 4.3E-130 1 434.7 0.43637127 258-1296 1039 1
TF312949 5.7E-59 1 199.2 0.42377153 261-1269 1009 1
TF105714 9.4E-82 1 274.6 0.43637127 285-1323 1039 1
TF330866 5.4E-60 1 202.9 0.4099118 285-1260 976 1
 

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0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)