Transcript : dd_Smed_v6_1034_0_1 S. mediterranea

Length  2381     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_031867.1 Mus musculus DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 0.0 157-1386 1230 1
NP_523533.2 Drosophila melanogaster maternal expression at 31B 0.0 82-1353 1272 1
NP_004388.2 Homo sapiens DEAD-box helicase 6 0.0 85-1368 1284 1

13 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PS51194 PROFILE IPR001650 Superfamilies 1 and 2 helicase C-terminal domain profile. 23.575 862-1341 480 1
G3DSA:3.40.50.300 GENE3D IPR027417 P-loop containing nucleotide triphosphate hydrolases 7.0E-50 850-1338 489 1
PTHR24031 PANTHER FAMILY NOT NAMED 5.1E-293 121-1584 1464 1
PS51195 PROFILE IPR014014 DEAD-box RNA helicase Q motif profile. 10.305 229-312 84 1
PF00271 PFAM IPR001650 Helicase conserved C-terminal domain 6.9E-24 1000-1224 225 1
SM00490 SMART IPR001650 helicase superfamily c-terminal domain 2.2E-27 982-1224 243 1
PF00270 PFAM IPR011545 DEAD/DEAH box helicase 2.4E-38 304-795 492 1
SM00487 SMART IPR014001 DEAD-like helicases superfamily 4.2E-46 286-873 588 1
SSF52540 SSF IPR027417 P-loop containing nucleoside triphosphate hydrolases 1.36E-67 433-1287 855 1
PTHR24031:SF76 PANTHER ATP-DEPENDENT RNA HELICASE DDX6-RELATED 5.1E-293 121-1584 1464 1
PS00039 PROSITE IPR000629 DEAD-box subfamily ATP-dependent helicases signature. 0.0 670-693 24 1
G3DSA:3.40.50.300 GENE3D IPR027417 P-loop containing nucleotide triphosphate hydrolases 2.3E-70 196-840 645 1
PS51192 PROFILE IPR014001 Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 27.982 322-831 510 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

6 ORFs

Contig Location Length Strand Sequence
82-1596 1515 1
1362-1523 162 -1
1346-1483 138 1
650-778 129 -1
1480-1605 126 -1
168-275 108 -1

18 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300440 1.4E-262 1 872.2 0.5157497 159-1386 1228 1
TF315215 5.5E-55 1 186.1 0.43889123 192-1236 1045 1
TF352222 7.7E-96 1 322.1 0.44141117 204-1254 1051 1
TF300442 4.3E-84 1 282.8 0.48173037 213-1359 1147 1
TF300340 1.7E-65 1 221.3 0.44015118 219-1266 1048 1
TF300466 7.1E-130 1 433.5 0.4640907 231-1335 1105 1
TF314957 4.8E-75 1 251.9 0.4552709 234-1317 1084 1
TF300332 7.5E-70 1 236.2 0.42629147 234-1248 1015 1
TF300471 6.9E-64 1 215.2 0.4250315 234-1245 1012 1
TF328622 5.1E-46 1 155.7 0.4451911 234-1293 1060 1
TF300351 3.7E-53 1 180.3 0.43637127 237-1275 1039 1
TF105707 2.3E-70 1 236.6 0.43133137 240-1266 1027 1
TF300527 4.6E-61 1 206.1 0.43133137 243-1269 1027 1
TF354236 8.4E-49 1 165.6 0.45275095 255-1332 1078 1
TF101524 4.3E-130 1 434.7 0.43637127 258-1296 1039 1
TF312949 5.7E-59 1 199.2 0.42377153 261-1269 1009 1
TF105714 9.4E-82 1 274.6 0.43637127 285-1323 1039 1
TF330866 5.4E-60 1 202.9 0.4099118 285-1260 976 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)