Transcript : dd_Smed_v6_1033_0_1 S. mediterranea

Length  764     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_002023.2 Homo sapiens ferritin, heavy polypeptide 1 3.0E-68 128-634 507 1
NP_001191661.1 Aplysia californica soma ferritin 3.0E-77 122-628 507 1
XP_002742298.1 Saccoglossus kowalevskii soma ferritin-like 6.0E-75 125-619 495 1

5 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR11431 PANTHER IPR001519 FERRITIN 2.8E-108 122-631 510 1
PF00210 PFAM IPR008331 Ferritin-like domain 2.2E-47 170-580 411 1
G3DSA:1.20.1260.10 GENE3D IPR012347   1.2E-82 125-628 504 1
SSF47240 SSF IPR009078 Ferritin-like 2.78E-71 125-628 504 1
PS50905 PROFILE IPR009040 Ferritin-like diiron domain profile. 47.94 143-586 444 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

6 ORFs

Contig Location Length Strand Sequence
125-634 510 1
189-428 240 -1
83-286 204 -1
201-320 120 1
3-104 102 1
464-565 102 -1

0 Treefam Sequence Features

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)