Transcript : dd_Smed_v6_10304_0_1 S. mediterranea

Length  6566     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_005493.2 Homo sapiens ATP binding cassette subfamily A member 1 0.0 659-6187 5529 1
NP_038482.3 Mus musculus ATP-binding cassette, sub-family A (ABC1), member 1 0.0 659-6187 5529 1
NP_001019864.1 Bos taurus ATP binding cassette subfamily A member 1 0.0 659-6187 5529 1

14 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
G3DSA:3.40.50.300 GENE3D IPR027417 P-loop containing nucleotide triphosphate hydrolases 7.3E-69 2222-2950 729 1
G3DSA:3.40.50.300 GENE3D IPR027417 P-loop containing nucleotide triphosphate hydrolases 1.8E-60 5171-5929 759 1
PS00211 PROSITE IPR017871 ABC transporters family signature. 0.0 2645-2686 42 1
SM00382 SMART IPR003593 ATPases associated with a variety of cellular activities 3.0E-6 5312-5863 552 1
SM00382 SMART IPR003593 ATPases associated with a variety of cellular activities 2.7E-10 2324-2872 549 1
SSF52540 SSF IPR027417 P-loop containing nucleoside triphosphate hydrolases 6.41E-57 2237-2890 654 1
PTHR19229 PANTHER IPR026082 ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A (ABCA 0.0 38-6244 6207 1
PS50893 PROFILE IPR003439 ATP-binding cassette, ABC transporter-type domain profile. 16.46 5240-5932 693 1
PF12698 PFAM ABC-2 family transporter protein 1.3E-21 983-2056 1074 1
PF12698 PFAM ABC-2 family transporter protein 3.0E-29 3488-5020 1533 1
PS50893 PROFILE IPR003439 ATP-binding cassette, ABC transporter-type domain profile. 19.995 2246-2941 696 1
PF00005 PFAM IPR003439 ABC transporter 3.3E-21 5285-5713 429 1
PF00005 PFAM IPR003439 ABC transporter 1.1E-29 2297-2728 432 1
SSF52540 SSF IPR027417 P-loop containing nucleoside triphosphate hydrolases 3.18E-49 5249-5923 675 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

13 ORFs

Contig Location Length Strand Sequence
26-6283 6258 1
5203-5430 228 -1
2584-2790 207 -1
2058-2204 147 1
1519-1665 147 -1
2619-2744 126 -1
1339-1464 126 -1
5433-5555 123 -1
1170-1289 120 1
3241-3360 120 -1
2880-2990 111 -1
1895-2005 111 -1
2353-2454 102 -1

0 Treefam Sequence Features

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)