Contig : dd_Smed_v6_10304_0_1 S. mediterranea

Id  dd_Smed_v6_10304_0_1 Length  6566    Open in Genome Browser

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_005493.2 Homo sapiens ATP-binding cassette, sub-family A (ABC1), member 1 0.0 659-6187 5529 1
NP_038482.3 Mus musculus ATP-binding cassette, sub-family A (ABC1), member 1 0.0 659-6187 5529 1
NP_001019864.1 Bos taurus ATP-binding cassette, sub-family A (ABC1), member 1 0.0 659-6187 5529 1

14 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
G3DSA:3.40.50.300 GENE3D IPR027417 P-loop containing nucleotide triphosphate hydrolases 7.3E-69 2222-2950 729 1
G3DSA:3.40.50.300 GENE3D IPR027417 P-loop containing nucleotide triphosphate hydrolases 1.8E-60 5171-5929 759 1
PS00211 PROSITE IPR017871 ABC transporters family signature. 0.0 2645-2686 42 1
SM00382 SMART IPR003593 ATPases associated with a variety of cellular activities 3.0E-6 5312-5863 552 1
SM00382 SMART IPR003593 ATPases associated with a variety of cellular activities 2.7E-10 2324-2872 549 1
SSF52540 SSF IPR027417 P-loop containing nucleoside triphosphate hydrolases 6.41E-57 2237-2890 654 1
PTHR19229 PANTHER IPR026082 ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A (ABCA 0.0 38-6244 6207 1
PS50893 PROFILE IPR003439 ATP-binding cassette, ABC transporter-type domain profile. 16.46 5240-5932 693 1
PF12698 PFAM ABC-2 family transporter protein 1.3E-21 983-2056 1074 1
PF12698 PFAM ABC-2 family transporter protein 3.0E-29 3488-5020 1533 1
PS50893 PROFILE IPR003439 ATP-binding cassette, ABC transporter-type domain profile. 19.995 2246-2941 696 1
PF00005 PFAM IPR003439 ABC transporter 3.3E-21 5285-5713 429 1
PF00005 PFAM IPR003439 ABC transporter 1.1E-29 2297-2728 432 1
SSF52540 SSF IPR027417 P-loop containing nucleoside triphosphate hydrolases 3.18E-49 5249-5923 675 1

13 ORFs

Contig Location Length Strand Sequence
26-6283 6258 1
5203-5430 228 -1
2584-2790 207 -1
2058-2204 147 1
1519-1665 147 -1
2619-2744 126 -1
1339-1464 126 -1
5433-5555 123 -1
1170-1289 120 1
3241-3360 120 -1
2880-2990 111 -1
1895-2005 111 -1
2353-2454 102 -1

0 Treefam SequenceFeatures

 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)