Contig : dd_Smed_v6_10273_0_1 S. mediterranea

Id  dd_Smed_v6_10273_0_1 Length  2723    Open in Genome Browser

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Homologue Displayer

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_056292.1 Homo sapiens SIN3 transcription regulator family member A 1.0E-41 49-2043 1995 1
NP_035508.2 Mus musculus transcriptional regulator, SIN3A (yeast) 1.0E-41 49-2043 1995 1
XP_005479210.1 Oreochromis niloticus paired amphipathic helix protein Sin3b-like 4.0E-47 37-2058 2022 1

4 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
SM00761 SMART IPR013194 Histone deacetylase (HDAC) interacting 2.0E-27 271-579 309 1
PTHR12346 PANTHER SIN3B-RELATED 1.9E-53 58-2049 1992 1
PF08295 PFAM IPR013194 Sin3 family co-repressor 8.2E-26 280-576 297 1
PTHR12346:SF0 PANTHER LD13852P 1.9E-53 58-2049 1992 1

9 ORFs

Contig Location Length Strand Sequence
1-2598 2598 1
1201-1377 177 -1
1714-1869 156 -1
2204-2329 126 -1
1026-1145 120 -1
685-804 120 -1
278-397 120 -1
2132-2239 108 1
2259-2360 102 1

0 Treefam SequenceFeatures

 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)