Transcript : dd_Smed_v6_10273_0_1 S. mediterranea

Length  2723     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_056292.1 Homo sapiens SIN3 transcription regulator family member A 1.0E-41 49-2043 1995 1
NP_035508.2 Mus musculus transcriptional regulator, SIN3A (yeast) 1.0E-41 49-2043 1995 1
XP_005479210.1 Oreochromis niloticus paired amphipathic helix protein Sin3b-like 4.0E-47 37-2058 2022 1

4 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
SM00761 SMART IPR013194 Histone deacetylase (HDAC) interacting 2.0E-27 271-579 309 1
PTHR12346 PANTHER SIN3B-RELATED 1.9E-53 58-2049 1992 1
PF08295 PFAM IPR013194 Sin3 family co-repressor 8.2E-26 280-576 297 1
PTHR12346:SF0 PANTHER LD13852P 1.9E-53 58-2049 1992 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

9 ORFs

Contig Location Length Strand Sequence
1-2598 2598 1
1201-1377 177 -1
1714-1869 156 -1
2204-2329 126 -1
1026-1145 120 -1
685-804 120 -1
278-397 120 -1
2132-2239 108 1
2259-2360 102 1

0 Treefam Sequence Features

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)