Contig : dd_Smed_v6_10084_0_5 S. mediterranea

Id  dd_Smed_v6_10084_0_5 Length  379    Open in Genome Browser

J Browse Displayer

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_080832.1 Mus musculus dynein light chain LC8-type 2 3.0E-52 70-336 267 1
NP_525075.1 Drosophila melanogaster cut up 7.0E-52 70-336 267 1
NP_003737.1 Homo sapiens dynein, light chain, LC8-type 1 1.0E-51 70-336 267 1

6 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PS01239 PROSITE IPR019763 Dynein light chain type 1 signature. 0.0 232-273 42 1
SSF54648 SSF DLC 2.88E-40 64-333 270 1
PF01221 PFAM IPR001372 Dynein light chain type 1 3.2E-42 70-333 264 1
G3DSA:3.30.740.10 GENE3D IPR001372 Protein Inhibitor Of Neuronal Nitric Oxide Synthase; 5.4E-44 70-333 264 1
PTHR11886:SF33 PANTHER DYNEIN LIGHT CHAIN 1, CYTOPLASMIC 8.5E-66 13-333 321 1
PTHR11886 PANTHER IPR001372 DYNEIN LIGHT CHAIN 8.5E-66 13-333 321 1

3 ORFs

Contig Location Length Strand Sequence
40-378 339 -1
70-336 267 1
48-155 108 -1

4 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300264 1.8E-69 1 232.8 0.6912929 72-333 262 1
TF354234 1.7E-44 1 152.0 0.66754615 84-336 253 1
TF324136 1.7E-20 1 72.6 0.62005275 93-327 235 1
TF340529 2.0E-21 4 75.7 0.70184696 67-334 268 -1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)