Contig : dd_Smed_v6_10084_0_4 S. mediterranea

Id  dd_Smed_v6_10084_0_4 Length  408    Open in Genome Browser

J Browse Displayer

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_080832.1 Mus musculus dynein light chain LC8-type 2 8.0E-54 103-369 267 1
NP_525075.1 Drosophila melanogaster cut up 2.0E-53 103-369 267 1
NP_003737.1 Homo sapiens dynein, light chain, LC8-type 1 5.0E-53 103-369 267 1

6 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF01221 PFAM IPR001372 Dynein light chain type 1 3.9E-43 103-366 264 1
PTHR11886:SF33 PANTHER DYNEIN LIGHT CHAIN 1, CYTOPLASMIC 3.6E-68 16-366 351 1
SSF54648 SSF DLC 1.96E-41 97-366 270 1
G3DSA:3.30.740.10 GENE3D IPR001372 Protein Inhibitor Of Neuronal Nitric Oxide Synthase; 8.3E-45 103-366 264 1
PS01239 PROSITE IPR019763 Dynein light chain type 1 signature. 0.0 265-306 42 1
PTHR11886 PANTHER IPR001372 DYNEIN LIGHT CHAIN 3.6E-68 16-366 351 1

4 ORFs

Contig Location Length Strand Sequence
1-369 369 1
136-408 273 -1
90-215 126 -1
171-278 108 1

4 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300264 2.9E-71 1 238.6 0.64215684 105-366 262 1
TF354234 2.2E-46 1 158.3 0.63480395 111-369 259 1
TF324136 6.0E-21 1 74.1 0.5833333 126-363 238 1
TF340529 5.2E-31 4 107.0 0.6372549 102-363 262 -1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)