Transcript : dd_Smed_v6_10084_0_4 S. mediterranea

Length  408     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
 Feedback

Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_080832.1 Mus musculus dynein light chain LC8-type 2 8.0E-54 103-369 267 1
NP_525075.1 Drosophila melanogaster cut up 2.0E-53 103-369 267 1
NP_003737.1 Homo sapiens dynein light chain LC8-type 1 5.0E-53 103-369 267 1

6 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF01221 PFAM IPR001372 Dynein light chain type 1 3.9E-43 103-366 264 1
PTHR11886:SF33 PANTHER DYNEIN LIGHT CHAIN 1, CYTOPLASMIC 3.6E-68 16-366 351 1
SSF54648 SSF DLC 1.96E-41 97-366 270 1
G3DSA:3.30.740.10 GENE3D IPR001372 Protein Inhibitor Of Neuronal Nitric Oxide Synthase; 8.3E-45 103-366 264 1
PS01239 PROSITE IPR019763 Dynein light chain type 1 signature. 0.0 265-306 42 1
PTHR11886 PANTHER IPR001372 DYNEIN LIGHT CHAIN 3.6E-68 16-366 351 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

4 ORFs

Contig Location Length Strand Sequence
1-369 369 1
136-408 273 -1
90-215 126 -1
171-278 108 1

4 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300264 2.9E-71 1 238.6 0.64215684 105-366 262 1
TF354234 2.2E-46 1 158.3 0.63480395 111-369 259 1
TF324136 6.0E-21 1 74.1 0.5833333 126-363 238 1
TF340529 5.2E-31 4 107.0 0.6372549 102-363 262 -1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)