Contig : dd_Smed_v6_10084_0_2 S. mediterranea

Id  dd_Smed_v6_10084_0_2 Length  491    Open in Genome Browser

J Browse Displayer

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_080832.1 Mus musculus dynein light chain LC8-type 2 2.0E-50 71-337 267 1
NP_525075.1 Drosophila melanogaster cut up 3.0E-50 71-337 267 1
NP_003737.1 Homo sapiens dynein, light chain, LC8-type 1 7.0E-50 71-337 267 1

6 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
SSF54648 SSF DLC 7.32E-40 65-334 270 1
G3DSA:3.30.740.10 GENE3D IPR001372 Protein Inhibitor Of Neuronal Nitric Oxide Synthase; 8.6E-44 71-334 264 1
PTHR11886 PANTHER IPR001372 DYNEIN LIGHT CHAIN 2.8E-64 59-334 276 1
PF01221 PFAM IPR001372 Dynein light chain type 1 4.5E-42 71-334 264 1
PS01239 PROSITE IPR019763 Dynein light chain type 1 signature. 0.0 233-274 42 1
PTHR11886:SF33 PANTHER DYNEIN LIGHT CHAIN 1, CYTOPLASMIC 2.8E-64 59-334 276 1

3 ORFs

Contig Location Length Strand Sequence
2-286 285 -1
71-337 267 1
49-156 108 -1

4 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300264 1.7E-68 2 229.5 0.53360486 72-333 262 1
TF354234 7.5E-43 2 146.6 0.51527494 84-336 253 1
TF324136 3.1E-19 2 68.5 0.42973524 93-303 211 1
TF340529 3.6E-18 5 65.1 0.52953154 68-329 262 -1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)