Transcript : dd_Smed_v6_10084_0_2 S. mediterranea

Length  491     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_080832.1 Mus musculus dynein light chain LC8-type 2 2.0E-50 71-337 267 1
NP_525075.1 Drosophila melanogaster cut up 3.0E-50 71-337 267 1
NP_003737.1 Homo sapiens dynein light chain LC8-type 1 7.0E-50 71-337 267 1

6 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
SSF54648 SSF DLC 7.32E-40 65-334 270 1
G3DSA:3.30.740.10 GENE3D IPR001372 Protein Inhibitor Of Neuronal Nitric Oxide Synthase; 8.6E-44 71-334 264 1
PTHR11886 PANTHER IPR001372 DYNEIN LIGHT CHAIN 2.8E-64 59-334 276 1
PF01221 PFAM IPR001372 Dynein light chain type 1 4.5E-42 71-334 264 1
PS01239 PROSITE IPR019763 Dynein light chain type 1 signature. 0.0 233-274 42 1
PTHR11886:SF33 PANTHER DYNEIN LIGHT CHAIN 1, CYTOPLASMIC 2.8E-64 59-334 276 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

3 ORFs

Contig Location Length Strand Sequence
2-286 285 -1
71-337 267 1
49-156 108 -1

4 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300264 1.7E-68 2 229.5 0.53360486 72-333 262 1
TF354234 7.5E-43 2 146.6 0.51527494 84-336 253 1
TF324136 3.1E-19 2 68.5 0.42973524 93-303 211 1
TF340529 3.6E-18 5 65.1 0.52953154 68-329 262 -1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)